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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCCTGAGAAAATGTACAAGAACTTGGACAACAGCACCCGAATTTTCAGATTTACAGTGCCTTTCCCCATCTTTGCATACCCTATGTACTTGgtgagaatgcttctctttgattaatcacaccccatgtcttgtcattgagaatttttcttatgataatttcatactttcactgcag

Basic information

species Vitis vinifera
transcript Vv06s0004g06730.t01
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352768954|gb|FQ468145.1|FQ468145
EST:     TTTTCAGATTTACAGTGCCTTTCCCCATCTTTGCATACCCTATGTACTTG                         TGGCATAGAAGCCCAGGGAAGAAGGGCTCCCACTTCAATCCTAACAGTGAT
genomic: TTTTCAGATTTACAGTGCCTTTCCCCATCTTTGCATACCCTATGTACTTGgtgagaatgc ... ttcactgcagTGGCATAGAAGCCCAGGGAAGAAGGGCTCCCACTTCAATCCTAACAGTGAT
EST: gi|161712917|gb|FC062390.1|FC062390
EST:     TTTTCAGATTTACAGTGCCTTTCCCCATCTTTGCATACCCTATGTACTTG                         TGGCATAGAAGCCCAGGGAAGAAAGGCTCCCACTTCAATCCTA-CAGTGAT
genomic: TTTTCAGATTTACAGTGCCTTTCCCCATCTTTGCATACCCTATGTACTTGgtgagaatgc ... ttcactgcagTGGCATAGAAGCCCAGGGAAGAAGGGCTCCCACTTCAATCCTAACAGTGAT
EST: gi|294966337|gb|GW837588.1|GW837588
EST:     TTTTCAGATTTACAGTGCCTTTCCCCATCTTTGCATACCCTATGTACTTG                         TGGCATAGAAGCCCA
genomic: TTTTCAGATTTACAGTGCCTTTCCCCATCTTTGCATACCCTATGTACTTGgtgagaatgc ... ttcactgcagTGGCATAGAAGCCCA
EST: gi|352773722|gb|FQ472504.1|FQ472504
EST:     TTTTCAGATTTACAGTGCCTTTCCCCATCTTTGCATACCCTATGTACTTG                         TGGCATAGAAGCCCAGGGAAGAAGGGCTCCCACTTCAATCCTAACAGTGAT
genomic: TTTTCAGATTTACAGTGCCTTTCCCCATCTTTGCATACCCTATGTACTTGgtgagaatgc ... ttcactgcagTGGCATAGAAGCCCAGGGAAGAAGGGCTCCCACTTCAATCCTAACAGTGAT
EST: gi|110379212|gb|EC944392.1|EC944392
EST:     ATCTTTGCATACCCTATGTACTTG                         TGGCATAGAAGCCCAGGGAAGAAGGGCTCCCACTTCAATCCTAACAGTGAT
genomic: ATCTTTGCATACCCTATGTACTTGgtgagaatgc ... ttcactgcagTGGCATAGAAGCCCAGGGAAGAAGGGCTCCCACTTCAATCCTAACAGTGAT
EST: gi|351019690|gb|FQ439507.1|FQ439507
EST:     TTTTCAGATTTACAGTGCCTTTCCCCATCTTTGCATACCCTATGTACTTG                         TGGCATAGAAGCCCAGGGAAGAAGGGCTCCCACTTCCATCCTAACAGTGAT
genomic: TTTTCAGATTTACAGTGCCTTTCCCCATCTTTGCATACCCTATGTACTTGgtgagaatgc ... ttcactgcagTGGCATAGAAGCCCAGGGAAGAAGGGCTCCCACTTCAATCCTAACAGTGAT