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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTTCTCTTCTGCAAGATCACTTCCCAAATCGTCTTGGCTGCTTGTTTGTTATACGACTTCCTCCAGTTGTCCGAGTTGTTGCTCAAACATTTATTCAAgtaaacttcttactgatttggatttggattactttcaggttcttttatttttttcattggaatcatggatcttcaaccctatgtcttctttgtgtggaagcttggctctttcttttatatatgaacatggatcggtggctctttctcag

Basic information

species Vitis vinifera
transcript Vv06s0004g04410.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g04410.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G003108_T01 (Zea mays), 5'ss of exon 6
TTCTTCTCTTCTGCAAGATCACTTCCCAAATCGTCTTGGCTGCTTGTTTGTTATACGACTTCCTCCAGTTGTCCGAGTTGTTGCTCAAACATTTATTCAAgtaaacttcttactgatttggatttgg-attactttcaggttcttttatttttttcattggaatcatggatcttcaaccctatgtcttctttgtgtggaagcttggctctttcttttatatatgaacatggatcggtggctctttctcag
|    || |    |||||  ||| |||||||||||||||    ||||||||| | || ||||||||||||||| ||||| |||| || |||||| |||||||||  |  ||| ||      | |||| ||  | | | | |  |||| | || |   |     || |   | ||      || |   |   | | |  ||  |                                               
TGTCACTGTAGCTCAAGAAAACTACCCAAATCGTCTTGGAGTATTGTTTGTTGTCCGCCTTCCTCCAGTTGTCAGAGTTATTGCACAGACATTTCTTCAAgtaagataattattgcaccctacttggcatcccatgctgctggttttgtcttgtgtgtccacttcgtctgtttta---tttaggcggtgaatatttttaaaat-----------------------------------------------

upper sequence: Vv06s0004g04410.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G148370_T01 (Zea mays), 5'ss of exon 6
TTCTTCTCTTCTGCAAGATCACTTCCCAAATCGTCTTGGCTGCTTGTTTGTTATACGACTTCCTCCAGTTGTCCGAGTTGTTGCTCAAACATTTATTCAAgtaaacttcttactgatttggatttggattactttcaggttcttttatttttttcattggaatcatggatcttcaaccctatgtcttctttgtgtggaagcttggctctttcttttatatatgaacatggatcggtggctctttctcag
     || |  | |||||  ||| ||| |||||||||||    |||||||| || || ||||||||||||||| ||||| |||| || |||||| |||||||||  |  | | |       | ||||       ||   | || ||  |||| ||       |  ||  ||     | ||  | ||  ||| | | |  | |    | |||   ||                                 
CATCACTGTGGTTCAAGAAAACTACCCGAATCGTCTTGGGGTATTGTTTGTCATCCGTCTTCCTCCAGTTGTCAGAGTTATTGCACAGACATTTCTTCAAgtaagataatcattacaccctacttgg-----catctaatgctattggttttgtc-------ttgtgtgtc-----cacttcgcctgttttatttaggtgatgaaatattttgattg--------------------------------

upper sequence: Vv06s0004g04410.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM5G846720_T04 (Zea mays), 5'ss of exon 2
TTCTTCTCTTCTGCAAGATCACTTCCCAAATCGTCTTGGCTGCTTGTTTGTTATACGACTTCCTCCAGTTGTCCGAGTTGTTGCTCAAACATTTATTCAAgtaaacttcttactgatttggatttggattactttcaggttcttttatttttttcattggaatcatggatcttcaaccctatgtcttctttgtgtggaagcttggctctttcttttatatatgaacatggatcggtggctctttctcag
|    || |  | |||||  ||| ||| |||||||||||    |||||||| || || ||||||||||||||| ||||| |||| || |||||| |||||||||  |  |   |       | ||||       ||   | |  ||  || ||   |    | |  |  | ||  |   || ||  |   | | |  |   |||||| |                                        
TATCACTGTGGTTCAAGAAAACTACCCGAATCGTCTTGGGGTATTGTTTGTCATCCGCCTTCCTCCAGTTGTCAGAGTTATTGCACAGACATTTCTTCAAgtaagataatagttacaccctacttgg-----catctaatgccattggttcttgtgtgtccacctcgcctgttttatt-taggtgatgaatattttaa---ttggcttt----------------------------------------

upper sequence: Vv06s0004g04410.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA15G04480.1 (Glycine max), 5'ss of exon 6
TTCTTCTCTTCTGCAAGATCACTTCCCAAATCGTCTTGGCTGCTTGTTTGTTATACGACTTCCTCCAGTTGTCCGAGTTGTTGCTCAAACATTTATTCAAgtaaa-----cttcttactgatttggatttggattactttcag-gttcttttatttttttcattggaatcatggatcttcaaccctatgtcttctttgtgtggaagcttggctctttcttttatatatgaacatggatcggtggctctttctcag
|||||||||||||||||| ||||| || ||| ||||||| ||| ||||||| || ||||| ||  |   ||| |  ||| || | || || |||||||| ||||      |||    || |||  |  |   || |||   |  ||      |     | ||| ||  |  |  ||| | || | | |       |                                                           
TTCTTCTCTTCTGCAAGACCACTTTCCTAATTGTCTTGGTTGCATGTTTGTCATTCGACTGCCGGCCAATGTTCTTGTTATTTCCCAGACTTTTATTCAGgtaagttatcctttcagcttattcagcctaaaatgactaagaaagtggcaagagaaggtgcatcgggttggtt-atcatgaaacatgtaggggtatcaaac------------------------------------------------------

upper sequence: Vv06s0004g04410.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA13G40980.2 (Glycine max), 5'ss of exon 5
TTCTTCTCTTCTGCAAGATCACTTCCCAAATCGTCTTGGCTGCTTGTTTGTTATACGACTTCCTCCAGTTGTCCGAGTTGTTGCTCAAACATTTATTCAAgtaaacttcttactgatttggatttggattactttcaggttcttttatttttttcattgg--aatcatggatcttcaaccctatgtcttctttgtgtggaagcttggctctttcttttatatatgaacatggatcggtggctctttctcag
|||||| |||||| |||| ||||| || ||||||||||| ||| ||||||| |||||| | ||  |   ||| |  ||| |||| || || |||||||| ||||  |       ||||    | ||  |||  |||||  |    |   |  |  | |||  |   | ||  | ||       ||           || | |                                                 
TTCTTCCCTTCTGAAAGACCACTTTCCTAATCGTCTTGGTTGCATGTTTGTCATACGATTGCCAGCCAATGTTCATGTTATTGCCCAGACTTTTATTCAGgtaagttatccttcgattcctttctgc-tta--ttcagcctaaaatgactaataaagtggcaagagaaggtgcatcgggttggtgatcatgaaacatgaaggg------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71858598|gb|DT007653.1|DT007653
EST:     TTATACGACTTCCTCCAGTTGTCCGAGTTGTTGCTCAAACATTTATTCAA                         GTTCTGAAACCCATTACCCGACAGAAGTTAAGATTCGAGGGGGAGATGTA
genomic: TTATACGACTTCCTCCAGTTGTCCGAGTTGTTGCTCAAACATTTATTCAAgtaaacttct ... tctttctcagGTTCTGAAACCCATTACCCGACAGAAGTTAAGATTCGAGGGGGAGATGTA