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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTCACTGAGCCATTGTTGATTGAGGTTGATAAGATATACCACCTTGCATGTCCCGCTTCTCCTATTTTTTATAAACACAATCCTGTAAAGgttagtatatttatgctatacttttgctcaccaatatgcttcattatcagtgctttagcatatatttgtcatgtattatttctctatctgatttggacag...

Basic information

species Vitis vinifera
transcript Vv06s0004g04390.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA11G15020.1 (Glycine max), 5'ss of exon 5
ATGTCACTGAGCCATTGTTGATTGAGGTTGATAAGATATACCACCTTGCATGTCCCGCTTCTCCTATTTTTTATAAACACAATCCTGTAAAGgt-tagtat--atttatgctatacttttgctcaccaatatgcttcattatcagtgctttagcatatatttgtcatgtattat---ttctctatctgatttggacag
|||||||||| || |||  ||||||||||||| |||| ||||| |||||||| ||||| ||||||||||| || ||| | |||||||| ||||| |||| |  | |  || | |   | |  |   || |||  ||    || ||      | ||||| ||| |||  |  ||    || |   | | |  |  |   
ATGTCACTGAACCTTTGACGATTGAGGTTGATCAGATCTACCATCTTGCATGCCCCGCATCTCCTATTTTCTACAAATATAATCCTGTGAAGgtatagttttgagtcttgttttgtctatattt--cattatattttg--attagcatacaaacatatttttctcagctgataaaggttttgcttttaacattcat--

upper sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA13G40960.1 (Glycine max), 5'ss of exon 6
ATGTCACTGAGCCATTGTTGATTGAGGTTGATAAGATATACCACCTTGCATGTCCCGCTTCTCCTATTTTTTATAAACACAATCCTGTAAAGgttagtatatttatgctatacttttgctcaccaatatgcttcattatcagtgctttagcatatatttgtcatgtattatt---tctctatctgatttggacag
||||||| ||||| || ||||| ||||||||| |||| ||||| |||||||| || || ||||||||||| || ||| ||||||| |||||||| |   | || |   | | ||||||   |  |||  || |  | ||      |    | |||   |||||  | ||        |  ||   | ||      
ATGTCACGGAGCCTTTATTGATCGAGGTTGATCAGATCTACCATCTTGCATGCCCTGCCTCTCCTATTTTCTACAAATACAATCCAGTAAAGgt-atagttttgagagtctgcttttgtctaataattggccttttaattgaaaatcatacttattcatgtcaaatgttggagaaattacattctacttcatt--

upper sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA15G04500.2 (Glycine max), 5'ss of exon 6
ATGTCACTGAGCCATTGTTGATTGAGGTTGATAAGATATACCACCTTGCATGTCCCGCTTCTCCTATTTTTTATAAACACAATCCTGTAAAGgttagtatatttatgctatacttttgctcaccaatatgcttcattatcagtgctttagcatatat-ttgtcatgtattatttctctatctgatttggacag-
||||||| ||||| || ||||| ||||||||| |||| ||||| |||||||| || || ||||||||||| || ||| ||||||| ||||||||   ||  || |   | | ||||||   | | |     |    | ||| |     | ||||  | |||   |  | | ||     |  ||  ||  ||   
ATGTCACGGAGCCTTTATTGATCGAGGTTGATCAGATCTACCATCTTGCATGCCCTGCCTCTCCTATTTTCTACAAATACAATCCAGTAAAGgt--atagtttgagagtctgcttttgtatatctaataattggcctttcaattgaaaatcatacttattgatgtcaactgttgaagaaattgcattctacttc

upper sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA12G06980.2 (Glycine max), 5'ss of exon 4
ATGTCACTGAGCCATTGTTGATTGAGGTTGATAAGATATACCACCTTGCATGTCCCGCTTCTCCTATTTTTTATAAACACAATCCTGTAAAGgttagtatatttatgctatacttttgctcaccaatatgcttcattatcagtgctttagcatatatttgtcatgtattatttctctatctgatttggacag------
||||||| |||| ||||||||||||||||||| | || || || |||||||| || |||||||| ||||| || ||| |||| |||||||||||  |  |   ||   | ||| |||      |  | |  || |  || |     | |||   | | |  ||||  ||||||||    | ||  |||          
ATGTCACAGAGCAATTGTTGATTGAGGTTGATCAAATCTATCATCTTGCATGCCCAGCTTCTCCAATTTTCTACAAATACAACCCTGTAAAGgtgggggttcgtagagtctacctttatatttc--tgtcatttaccatgatcctgtcagc---tgtcta-catgatttatttcttgcacagaagtggctttaggtct

upper sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA11G15010.1 (Glycine max), 5'ss of exon 5
ATGTCACTGAGCCATTGTTGATTGAGGTTGATAAGATATACCACCTTGCATGTCCCGCTTCTCCTATTTTTTATAAACACAATCCTGTAAAGgttagtatatttatgctatacttttgctcaccaatatgcttcattatcagtgctttagcatatatttgtcatgtattatttctctatc--tgatttggacag-
||||||| |||| ||||||||||||||||||| | || || || |||||||| || |||||||| || || || ||| |||| |||||||||||  |  |  |||   | |||||||      |  | |  || |  || |     | ||| | | |   | || ||||  ||    |    |  |||       
ATGTCACAGAGCAATTGTTGATTGAGGTTGATCAAATCTATCATCTTGCATGCCCTGCTTCTCCAATCTTCTACAAATACAACCCTGTAAAGgtgggggttcttagattctacttttatatttc--tgtcatttaccatgatcctgtcagc-tgtctacatgatttatttcttgcacaggagtagttttagttcc

upper sequence: Vv06s0004g04390.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA12G06990.1 (Glycine max), 5'ss of exon 5
ATGTCACTGAGCCATTGTTGATTGAGGTTGATAAGATATACCACCTTGCATGTCCCGCTTCTCCTATTTTTTATAAACACAATCCTGTAAAGgttagtatatttatgctatacttt-tgctcaccaatatgcttcattatcagtgctttagcatatatttgtcatgtattat---ttctctatctgatttggacag
|||||||||| || |||  ||||||||||||| |||| ||||| ||||| || || || ||||||||||| || ||| | ||||| || |||||   ||  |||  |   |  ||| ||   |      |   |  |  |  |      | ||||| ||| |||  |  ||    || |   | | |  |  |   
ATGTCACTGAACCTTTGACGATTGAGGTTGATCAGATCTACCATCTTGCGTGCCCTGCATCTCCTATTTTCTACAAATATAATCCCGTGAAGgt--atagttttgagtcttgttttgtgtatatttcattatcttttgcttggcatgcaaacatatttttctcaactgataaaggtttttcttttaacattcat--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33409748|gb|CF215375.1|CF215375
EST:     ACCTTGCATGTCCCGCTTCTCCTATTTTTTATAAACACAATCCTGTAAAG                         ACAATAAAAACAAACGTCATTGGTACACTGAATATGCTGGGACTTGCCAAA
genomic: ACCTTGCATGTCCCGCTTCTCCTATTTTTTATAAACACAATCCTGTAAAGgttagtatat ... actttaacagACAATAAAAACAAACGTCATTGGTACACTGAATATGCTGGGACTTGCCAAA
EST: gi|33408202|gb|CF213829.1|CF213829
EST:     ACCTTGCATGTCCCGCTTCTCCTATTTTTTATAAACACAATCCTGTAAAG                         ACAATAAAAACAAACGTCATTGGTACACTGAATATGCTGGGACTTGCCAAA
genomic: ACCTTGCATGTCCCGCTTCTCCTATTTTTTATAAACACAATCCTGTAAAGgttagtatat ... actttaacagACAATAAAAACAAACGTCATTGGTACACTGAATATGCTGGGACTTGCCAAA
EST: gi|71879035|gb|DT028090.1|DT028090
EST:     CCTTGCATGTCCCGCTTCTCCTANNNNNNNATAAACACAATCCTGTAAAG                         ACAATAAAAACAAACGTCATTGGTACACTGAATATGCTGGGACTTGCCAAA
genomic: CCTTGCATGTCCCGCTTCTCCTATTTTTT-ATAAACACAATCCTGTAAAGgttagtatat ... actttaacagACAATAAAAACAAACGTCATTGGTACACTGAATATGCTGGGACTTGCCAAA
EST: gi|71879209|gb|DT028264.1|DT028264
EST:     CCTTGCATGTCCCGCTTCTCCTANNNNNNNATAAACACAATCCTGTAAAG                         ACAATAAAAACAAACGTCATTGGTACACTGAATATGCTGGGACTTGCCAAA
genomic: CCTTGCATGTCCCGCTTCTCCTATTTTTT-ATAAACACAATCCTGTAAAGgttagtatat ... actttaacagACAATAAAAACAAACGTCATTGGTACACTGAATATGCTGGGACTTGCCAAA
EST: gi|33407209|gb|CF212836.1|CF212836
EST:     ACCTTGCATGTCCCGCTTCTCCTATTTTTTATAAACACAATCCTGTAAAG                         ACAATAAAAACAAACGTCATTGGTACACTGAATATGCTGGGACTTGCCAAA
genomic: ACCTTGCATGTCCCGCTTCTCCTATTTTTTATAAACACAATCCTGTAAAGgttagtatat ... actttaacagACAATAAAAACAAACGTCATTGGTACACTGAATATGCTGGGACTTGCCAAA
EST: gi|37190531|gb|CF609880.1|CF609880
EST:     ACCTTGCATGTCCCGCTTCTCCTATTTTTTATAAACACAATCCTGTAAAG                         ACAATAAAAACAAACGTCATTGGTACACTGAATATGCTGGGACTTGCCAAA
genomic: ACCTTGCATGTCCCGCTTCTCCTATTTTTTATAAACACAATCCTGTAAAGgttagtatat ... actttaacagACAATAAAAACAAACGTCATTGGTACACTGAATATGCTGGGACTTGCCAAA
EST: gi|71881039|gb|DT030094.1|DT030094
EST:     CCTTGCATGTCCCGCTTCTCCTANNNNNNNATAAACACAATCCTGTAAAG                         ACAATAAAAACAAACGTCATTGGTACACTGAATATGCTGGGACTTGCCAAA
genomic: CCTTGCATGTCCCGCTTCTCCTATTTTTT-ATAAACACAATCCTGTAAAGgttagtatat ... actttaacagACAATAAAAACAAACGTCATTGGTACACTGAATATGCTGGGACTTGCCAAA
EST: gi|30297461|gb|CB974255.1|CB974255
EST:     ACCTTGCATGTCCCGCTTCTCCTATTTTTTATAAACACAATCCTGTAAAG                         ACAATAAAAACAAACGTCATTGGTACACTGAATATGCTGGGACTTGCCAAA
genomic: ACCTTGCATGTCCCGCTTCTCCTATTTTTTATAAACACAATCCTGTAAAGgttagtatat ... actttaacagACAATAAAAACAAACGTCATTGGTACACTGAATATGCTGGGACTTGCCAAA
EST: gi|33407983|gb|CF213610.1|CF213610
EST:     ACCTTGCATGTCCCGCTTCTCCTATTTTTTATAAACACAATCCTGTAAAG                         ACAATAAAAACAAACGTCATTGGTACACTGAATATGCTGGGACTTGCCAAA
genomic: ACCTTGCATGTCCCGCTTCTCCTATTTTTTATAAACACAATCCTGTAAAGgttagtatat ... actttaacagACAATAAAAACAAACGTCATTGGTACACTGAATATGCTGGGACTTGCCAAA
EST: gi|33406260|gb|CF211887.1|CF211887
EST:     ACCTTGCATGTCCCGCTTCTCCTATTTTTTATAAACACAATCCTGTAAAG                         ACAATAAAAACAAACGTCATTGGTACACTGAATATGCTGGGACTTGCCAAA
genomic: ACCTTGCATGTCCCGCTTCTCCTATTTTTTATAAACACAATCCTGTAAAGgttagtatat ... actttaacagACAATAAAAACAAACGTCATTGGTACACTGAATATGCTGGGACTTGCCAAA