Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTTGGACGATGAATCACCCAAGAAGAAAAACGGGAACGTGCTAAAGAAGATTGGGGTGTTATGGAAGAAGCCACATAAATAAGATCACCATTAAGAAGgcaggttcagtgttccttgctattatcgctttattctaacctatttatttcaccaattcgaactaaccacatcctctaatcttttgacag

Basic information

species Vitis vinifera
transcript Vv06s0004g03400.t01
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352782108|gb|FQ470010.1|FQ470010
EST:     GATTGGGGTGTTATGGAAGAAGCCACATAAATAAGATCACCATTAAGAAG                         ATACCTTGGTGGGTGGAAACATCTACTTCTCACCATTGAAAGTAAACTTGG
genomic: GATTGGGGTGTTATGGAAGAAGCCACATAAATAAGATCACCATTAAGAAGgcaggttcag ... cttttgacagATACCTTGGTGGGTGGAAACATCTACTTCTCACCATTGAAAGTAAACTTGG
EST: gi|33403250|gb|CF208877.1|CF208877
EST:     GATTGGGGTGTTATGGAAGAAGCCACATAAATAAGATCACCATTAAGAAG                         ATACCTTGGTGGGTGGAAACATTTACTTTTCACCATTGAAAGTAAACTTGG
genomic: GATTGGGGTGTTATGGAAGAAGCCACATAAATAAGATCACCATTAAGAAGgcaggttcag ... cttttgacagATACCTTGGTGGGTGGAAACATCTACTTCTCACCATTGAAAGTAAACTTGG
EST: gi|33403142|gb|CF208769.1|CF208769
EST:     GATTGGGGTGTTATGGAAGAAGCCACATAAATAAGATCACCATTAAGAAG                         ATACCTTGGTGGGTGGAAACATCTACTTCTCACCATTGAAAGTAAACTTGG
genomic: GATTGGGGTGTTATGGAAGAAGCCACATAAATAAGATCACCATTAAGAAGgcaggttcag ... cttttgacagATACCTTGGTGGGTGGAAACATCTACTTCTCACCATTGAAAGTAAACTTGG
EST: gi|33403231|gb|CF208858.1|CF208858
EST:     GATTGGGGTGTTATGGAAGAAGCCACATAAATAAGATCACCATTAAGAAG                         ATACCTTGGTGGGTGGAAACATTTACTTCTCACCATTGAAAGTAAACTTGG
genomic: GATTGGGGTGTTATGGAAGAAGCCACATAAATAAGATCACCATTAAGAAGgcaggttcag ... cttttgacagATACCTTGGTGGGTGGAAACATCTACTTCTCACCATTGAAAGTAAACTTGG
EST: gi|352772562|gb|FQ472037.1|FQ472037
EST:     GATTGGGGTGTTATGGAAGAAGCCACATAAATAAGATCACCATTAAGAAG                         ATACCTTGGTGGGTGGAAACATCTACTTCTCACCATTGAAAGTAAACTTGG
genomic: GATTGGGGTGTTATGGAAGAAGCCACATAAATAAGATCACCATTAAGAAGgcaggttcag ... cttttgacagATACCTTGGTGGGTGGAAACATCTACTTCTCACCATTGAAAGTAAACTTGG
EST: gi|33403172|gb|CF208799.1|CF208799
EST:     GATTGGGGTGTTATGGAAGAAGCCACATAAATAAGATCACCATTAAGAAG                         ATACCTTGGTGGGTGGAAACATCTACTTCTCACCATTGAAAGTAAACTTGG
genomic: GATTGGGGTGTTATGGAAGAAGCCACATAAATAAGATCACCATTAAGAAGgcaggttcag ... cttttgacagATACCTTGGTGGGTGGAAACATCTACTTCTCACCATTGAAAGTAAACTTGG
EST: gi|352769526|gb|FQ468454.1|FQ468454
EST:     GATTGGGGTGTTATGGAAGAAGCCACATAAATAAGATCACCATTAAGAAG                         ATACCTTGGTGGGTGGAAACATCTACTTCTCACCATTGAAAGTAAACTTGG
genomic: GATTGGGGTGTTATGGAAGAAGCCACATAAATAAGATCACCATTAAGAAGgcaggttcag ... cttttgacagATACCTTGGTGGGTGGAAACATCTACTTCTCACCATTGAAAGTAAACTTGG
EST: gi|83274482|gb|DV938579.1|DV938579
EST:     GATTGGGGTGTTATGGAAGAAGCCACATAAATAAGATCACCATTAAGAAG                         ATACCTTGGTGGGTGGAAACATATACTTCTCACCATTGAAAGTAAACTTGG
genomic: GATTGGGGTGTTATGGAAGAAGCCACATAAATAAGATCACCATTAAGAAGgcaggttcag ... cttttgacagATACCTTGGTGGGTGGAAACATCTACTTCTCACCATTGAAAGTAAACTTGG
EST: gi|33403262|gb|CF208889.1|CF208889
EST:     GATTGGGGTGTTATGGAAGAAGCCACATAAATAAGATCACCATTAAGAAG                         ATACCTTGGTGGGTGGAAACATTTACTTCTCACCATTGAAAGTAAACTTGG
genomic: GATTGGGGTGTTATGGAAGAAGCCACATAAATAAGATCACCATTAAGAAGgcaggttcag ... cttttgacagATACCTTGGTGGGTGGAAACATCTACTTCTCACCATTGAAAGTAAACTTGG
EST: gi|33403160|gb|CF208787.1|CF208787
EST:     GATTGGGGTGTTATGGAAGAAGCCACATAAATAAGATCACCATTAAGAAG                         ATACCTTGGTGGGTGGAAACATCTACTTCTCACCATTGAAAGTAAACTTGG
genomic: GATTGGGGTGTTATGGAAGAAGCCACATAAATAAGATCACCATTAAGAAGgcaggttcag ... cttttgacagATACCTTGGTGGGTGGAAACATCTACTTCTCACCATTGAAAGTAAACTTGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GACTTGGACGATGAATCACCCAAGAAGAAAAACGGGAACGTGCTAAAGAAGATTGGGGTGTTATGGAAGAAGCCACATAAATAAGATCACCATTAAGAAGgcaggttcagtgttccttgctattatcgctttattctaacctatttatttcaccaattcgaactaaccacatcctctaatcttttgacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG