1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GAAACACCGAGGTAGTGGCATTCTTCATTGGCTCAAGTCTAAGTATAGTCAGGAAGAGGAGGAATTGATGGGCTTCCTTGGCCCAATACACATATGGCAGgttagcacacaccacctttcagctcatgagtccacagtaatcactgctgctgttgatctaaagaacgtagaaaccttaattcacagttatagtcctgttg...
species | Vitis vinifera |
transcript | Vv06s0004g03310.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGGAAGAGGAGGAATTGATGGGCTTCCTTGGCCCAATACACATATGGCAG GGAATGGACGATAGGGTTGTCCCACCCTCAATGACAGATTTTGTGCATCGGEST: gi|30296461|gb|CB973255.1|CB973255
genomic: AGGAAGAGGAGGAATTGATGGGCTTCCTTGGCCCAATACACATATGGCAGgttagcacac ... tgctggacagGGAATGGACGATAGGGTCGTCCCACCCTCAATGACAGATTTTGTGCATCGG
EST: AGGAAGAGGAGGAATTGATGGGCTTCCTTGGCCCAATACACATATGGCAG GGAATGGACGATAGGGTCGTCCCACCCTCAATGACAGATTTTGTGCATCGG
genomic: AGGAAGAGGAGGAATTGATGGGCTTCCTTGGCCCAATACACATATGGCAGgttagcacac ... tgctggacagGGAATGGACGATAGGGTCGTCCCACCCTCAATGACAGATTTTGTGCATCGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAACACCGAGGTAGTGGCATTCTTCATTGGCTCAAGTCTAAGTATAGTCAGGAAGAGGAGGAATTGATGGGCTTCCTTGGCCCAATACACATATGGCAGgttagcacacaccacctttcagctcatgagtccacagtaatcactgctgctgttgatctaaagaacgtagaaaccttaattcacagttatagtcctgttg
- - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtagaaa