1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AATGGCATGCCCAGCTCTACCACTGTGCCCTCTTGCAATAACTGAAGCTGAGCGGGGAATACCTGACCTCCTCAAGCGGGTTCGAGCTGTATTTGAAAAGgtatattactggaaacacaattctattagtccagcaaagcaccctagatgagaagtggcagatgatcatcaggtgtagtttcccattgttcactcattaacaggattctctatgatatcag
species | Vitis vinifera |
transcript | Vv06s0004g02330.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGCGGGGAATACCTGACCTCCTCAAGCGGGTTCGAGCTGTATTTGAAAAG GTTGGTCTCAAGTACAATGAATCTGTGGTTATTCGGGTAACTGGCTGCCCTEST: gi|110380705|gb|EC945992.1|EC945992
genomic: AGCGGGGAATACCTGACCTCCTCAAGCGGGTTCGAGCTGTATTTGAAAAGgtatattact ... atgatatcagGTTGGTCTCAAGTACAATGAATCTGTGGTTATTCGGGTAACTGGCTGCCCT
EST: AGCGGGGAATACCTGACCTCCTCAAGCGGGTTCGAGCTGTATTTGAAAAG GTTGGTCTCAAGTACAATGAATCTGTGGTTATTCGGGTAACTGGCTGCCCTEST: gi|161716240|gb|FC066503.1|FC066503
genomic: AGCGGGGAATACCTGACCTCCTCAAGCGGGTTCGAGCTGTATTTGAAAAGgtatattact ... atgatatcagGTTGGTCTCAAGTACAATGAATCTGTGGTTATTCGGGTAACTGGCTGCCCT
EST: AGCGGGGAATACCTGACCTCCTCAAGCGGGTTCGAGCTGTATTTGAAAAG GTTGGT-TCAAGTACAATGAATCTGTGGTTATTCGGGTAACTGGCTGCCCTEST: gi|110381798|gb|EC935409.1|EC935409
genomic: AGCGGGGAATACCTGACCTCCTCAAGCGGGTTCGAGCTGTATTTGAAAAGgtatattact ... atgatatcagGTTGGTCTCAAGTACAATGAATCTGTGGTTATTCGGGTAACTGGCTGCCCT
EST: AGCGGGGAATACCTGACCTCCTCAAGCGGGTTCGAGCTGTATTTGAAAAG GTTGGTCTCAAGTACAATGAATCTGTGGTTATTCGGGTAACTGGCTGCCCTEST: gi|30255100|gb|CB971547.1|CB971547
genomic: AGCGGGGAATACCTGACCTCCTCAAGCGGGTTCGAGCTGTATTTGAAAAGgtatattact ... atgatatcagGTTGGTCTCAAGTACAATGAATCTGTGGTTATTCGGGTAACTGGCTGCCCT
EST: AGCGGGGAATACCTGACCTCCTCAAGCGGGTTCGAGCTGTATTTGAAAAG GTTGGCCTCAAGTACAATGAATCTGTGGTTATTCGGGTAACTGGCTGCCCTEST: gi|30255485|gb|CB971617.1|CB971617
genomic: AGCGGGGAATACCTGACCTCCTCAAGCGGGTTCGAGCTGTATTTGAAAAGgtatattact ... atgatatcagGTTGGTCTCAAGTACAATGAATCTGTGGTTATTCGGGTAACTGGCTGCCCT
EST: CCTCAAGCGGGTTCGAGCTGTATTTGAAAAG GTTGGTCTCAAGTCCAATGAATCTGTGGTTATTCGGGTAACTGGCTGCCCT
genomic: CCTCAAGCGGGTTCGAGCTGTATTTGAAAAGgtatattact ... atgatatcagGTTGGTCTCAAGTACAATGAATCTGTGGTTATTCGGGTAACTGGCTGCCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATGGCATGCCCAGCTCTACCACTGTGCCCTCTTGCAATAACTGAAGCTGAGCGGGGAATACCTGACCTCCTCAAGCGGGTTCGAGCTGTATTTGAAAAGgtatattactggaaacacaattctattagtccagcaaagcaccctagatgagaagtggcagatgatcatcaggtgtagtttcccattgttcactcattaacaggattctctatgatatcag
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