Sequence
atgc intronic sequence ATGC exonic sequenceGCTGATAGCATATCTGGTTTTCATGCCAATACACATATCCCAGTTGTTATTGGATCCCAAATGCGGTATGAAGTCACTGGTGATCCACTTTACAAGgtgagttgctgtaaataaattatggatcatttcaaatatactgaacaaaatcaaatgtgttctaaactgctaatgtgtgtgcctaataattatgtgattc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g01770.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os02g10190.1 (Oryza sativa), 5'ss of exon 5
GCTGATAGCATATCTGGTTTTCATGCCAATACACATATCCCAGTTGTTATTGGATCCCAAATGCGGTATGAAGTCACTGGTGATCCACTTTACAAGgtgagttgctgtaaa---taaattatgga---tcatttcaaatatactgaacaaaatcaa--atgtgttctaaactgctaatgtgtgtgcctaataattatgtgattc
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GCCGACAGTATTTCAGGCTTCCATTCCAATACACACATTCCAGTTGTTATTGGTGCACAGATGAGATATGAAGTTACTGGTGATCTTCTTTACAAGgtaaaagaacacaaacctttctttctggatatttactccatatgcatacatgaagatgaattatctgtccagggatatggatatgaatgtacaatgctaa--------
upper sequence: Vv06s0004g01770.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os06g41020.1 (Oryza sativa), 5'ss of exon 5
GCTGATAGCATATCTGGTTTTCATGCCAATACACATATCCCAGTTGTTATTGGATCCCAAATGCGGTATGAAGTCACTGGTGATCCACTTTACAAGgtgagttgctgtaaataaattatggatcatttcaaatatactgaacaaaatcaaatgtgttctaaactgctaatgtgtgtgcctaataattatgtgattc--
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GCTGACAGTCTTTCGGGTTTTCATGCAAATACACACATTCCTGTTGTCATCGGTGGGCAAATGAGATATGAAGTTACTGGTGATCCTCTTTACAAGgtaaaacttatggggcatgttg-atttcaagagagaagagagacacatggtccatggtacttcatgatgttgctac-tataatccacttctatgggtgtccg
upper sequence: Vv06s0004g01770.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G058739_T01 (Zea mays), 5'ss of exon 1
----GCTGATAGCATATCTGGTTTTCATGCCAATACACATATCCCAGTTGTTATTGGATCCCAAATGCGGTATGAAGTCACTGGTGATCCACTTTACAAGgtgagtt---gctgtaaataaattatggatcatttcaaatatactgaaca-aaatcaaatgtgttctaaactgctaatgtgtgtgcctaataattatgtgattc
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TCAGGCTGACAGTATTTCCGGTTTTCATTCAAACACACACATTCCAGTTGTCATTGGTGCGCAAATGAGGTATGAAGTTACTGGAGATCCTCTTTACAAGgtaaaattcaactatatcttattactagagagttgagtattccattttcacagacggtgcacgttcttatcagttccgat-tatga-tgatagttact--attc
upper sequence: Vv06s0004g01770.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA15G03770.1 (Glycine max), 5'ss of exon 5
GCTGATAGCATATCTGGTTTTCATGCCAATACACATATCCCAGTTGTTATTGGATCCCAAATGCGGTATGAAGTCACTGGTGATCCACTTTACAAGgtgagttgctgtaaataaattatggatcatttcaaatatactgaacaaaatcaaatgtgttctaaactgctaatgtgtgtgcctaata-attatgtgattc-----
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GCGAATGATATAGCTCATTTTCATGCTAATACACATATCCCAGTGATTGTTGGATCTCAAATGCGGTATGAAGTCACTGGTGATCCACTTTATAAGgtgaattgctttatgtatgctgtagattactg-----gtactgaaatttgttgttattattttaaattccgataatggttcttgaatttggtttttggtgtgttag
upper sequence: Vv06s0004g01770.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA11G14020.1 (Glycine max), 5'ss of exon 5
GCTGATAGCATATCTGGTTTTCATGCCAATACACATATCCCAGTTGTTATTGGATCCCAAATGCGGTATGAAGTCACTGGTGATCCACTTTACAAGgtgagttgctgtaaataaattatggatcatttcaaatatactgaacaaaatcaaatgtgttctaaactgctaatgtgtgtgcctaataattatgtgattc-
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GCTAATGACATAGCTAATTTTCATGCCAATACACATATCCCAGTTGTTGTTGGATCTCAAATGCGGTATGAAATCACAGGCGATCCACTGTATAAGgtaagttgcttccctcacattgtacattactg-atgtatgtttcattaagtttgaatggaattgtatttattttctatttattggactaatatgcagtata
upper sequence: Vv06s0004g01770.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA11G14000.1 (Glycine max), 5'ss of exon 6
GCTGATAGCATATCTGGTTTTCATGCCAATACACATATCCCAGTTGTTATTGGATCCCAAATGCGGTATGAAGTCACTGGTGATCCACTTTACAAGgtgagttgctgtaaataaattatggatcatttcaaatatactgaacaaaatc-aaatgtgttctaaactgctaatgtgtgtgccta-ataattatgtgattc
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GCTAATGACATAGCTGATTTTCATGCTAATACACATATCCCAGTTGTTGTTGGATCTCAAATGCGGTATGAAATCACAGGCGATCCACTTTATCAGgtgatttgcttcactcacattatatattactg-atatatatttcattgagtttaaatggagttttatttatttgt-tatttattggcataataatattattt
upper sequence: Vv06s0004g01770.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA12G05980.1 (Glycine max), 5'ss of exon 5
GCTGATAGCATATCTGGTTTTCATGCCAATACACATATCCCAGTTGTTATTGGATCCCAAATGCGGTATGAAGTCACTGGTGATCCACTTTACAAGgtgagttgctgtaaataaattatggatcatttcaaatatactgaacaaaatc-aaatgtgttctaaactg---ctaatgtgtgtgcctaataattatgtgattc
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GCTAATGACATAGCTGATTTACATGCTAATACACATATCCCAATTGTTGTTGGATCTCAAATGCGGTATGAAATCACAGGCGATCCACTTTATAAGgtgaattgcttcgctcacattgtagattactg-atatatatttcattaagtttgaatggaatcgtatctatatctgtcattcaaacttca-aattacatgtc--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161721828|gb|FC070507.1|FC070507EST: TTATTGGATCCCAAATGCGGTATGAAGTCACTGGTGATCCACTTTACAAG GCAATAGGGACATTCTTCATGGACATTGTTAACTCCTCTCATAGCTATG
genomic: TTATTGGATCCCAAATGCGGTATGAAGTCACTGGTGATCCACTTTACAAGgtgagttgct ... tgtgtgccagGCAATAGGGACATTCTTCATGGACATTGTTAACTCCTCTCATAGCTATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCTGATAGCATATCTGGTTTTCATGCCAATACACATATCCCAGTTGTTATTGGATCCCAAATGCGGTATGAAGTCACTGGTGATCCACTTTACAAGgtgagttgctgtaaataaattatggatcatttcaaatatactgaacaaaatcaaatgtgttctaaactgctaatgtgtgtgcctaataattatgtgattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacaaaa