Sequence
atgc intronic sequence ATGC exonic sequenceGTTGCCAGATGGTTCTTTGATGGAGATCACCAAAATATATCCTTTGGATGCAGTTTATGACACCCTTGAGGATGTACCTGAAGATgtaagaaagaagtttattgtcctataataaatatgaaaaatggtcaagtgcatcctcagtatatcattgttttatgagtctatgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g01310.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G079256_T01 (Zea mays), 5'ss of exon 5
GTTGCCAGATGGTTCTTTGATGGAGATCACCAAAATATATCCTTTGGATGCAGTTTATGACACCCTTGAGGATGTACCTGAAGATgtaagaaagaagtttattgtcctataataaatatgaaaaatggtcaagtgcatcctcagtatatcattgttttatgagtctatgcag
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GCTACCTGATGGATCTCTTATGGAGATTGCTAAAGTATATCCACTGGACGCAGTTTATGACACCCCTGAGGATGTTCCTGAAGATgtaat------gctcatcatt-tatgatgtttctgttatcatttttctttcatgctttatgaacctttttgtccctgttgcag----
upper sequence: Vv06s0004g01310.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA11G10770.1 (Glycine max), 5'ss of exon 5
GTTGCCAGATGGTTCTTTGATGGAGATCACCAAAATATATCCTTTGGATGCAGTTTATGACACCCTTGAGGATGTACCTGAAGATgtaagaaagaagtttattgtcctataataaatatgaaaaatggtcaagtgcatcctcagtatatcattgttttatgagtctatgcag
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ATTACCAGATGGTTCGCTGATGGAGATTACCAAAGTTTATCCATTGGATGCAGTTTTTGACAATCTTGATGATGTGCCAGAAGATgtaaatccgagatgcctagtttctttttgcatgtcagaatttat-atcctcatgctgattctttttttcttttgaacaattgtatag
upper sequence: Vv06s0004g01310.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA08G45990.1 (Glycine max), 5'ss of exon 5
GTTGCCAGATGGTTCTTTGATGGAGATCACCAAAATATATCCTTTGGATGCAGTTTATGACACCCTTGAGGATGTACCTGAAGATgtaagaaagaagtttattgtc-ctat-aataaatatgaaaaatggtcaagtgcatcctcagtatatcattgttttatg--agtctatgcag
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ATTACAAGATGGTTCATTGATGGAGATTGCTAAAGTGTATCCTTTGGATGCAGTATATGACAGTCCTGAAGATGTCCCGGAAGATgtaagagagaagtacataataattatcaaaatatacaaagtacatttacaaaacttatcatcttttatttttttggtggaaaattgtatag
upper sequence: Vv06s0004g01310.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA18G31780.1 (Glycine max), 5'ss of exon 4
GTTGCCAGATGGTTCTTTGATGGAGATCACCAAAATATATCCTTTGGATGCAGTTTATGACACCCTTGAGGATGTACCTGAAGATgtaagaaagaagtttattgtcctataataaatatgaaaaatg-gtcaagtgcatcctcagtatatcattgttttat---gagtctatgcag
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ATTACAAGATGGTTCGTTAATGGAGATTGCTAAAGTGTATCCTTTGGATGCAGTATATGACAATCCTGAAGATGTCCCGGAAGATgtaagagagaagtacataatagttatgaaaatacacaacgtacatttacaaaacttttcatcttctatttttttgttgaaaaattgtatag
upper sequence: Vv06s0004g01310.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA12G03060.1 (Glycine max), 5'ss of exon 6
GTTGCCAGATGGTTCTTTGATGGAGATCACCAAAATATATCCTTTGGATGCAGTTTATGACACCCTTGAGGATGTACCTGAAGATgtaagaaagaagtttattgtcctataataaatatgaaaaatggtcaagtgcatcctcagtatatcattgttttatgagtctatgcag
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ATTACCAGATGGCTCGATGATGGAGATTACCAAAGTTTATCCATTGGATGCAGTTTTTGACAATCCCGATGATGTGCCTGAAGATgtaaacacgagatgcctaatttctttttgcatgtcagaacttat-atcctcatgctgatt---ttttttttttggacaattatatagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|349828693|gb|FQ418428.1|FQ418428EST: ATATCCCTTTGGATGCAGTTTATGACACCCTTGAGGATGTACCTGAAGAT GTAAAAGCAAATAAGCGTTATGCTGG
genomic: ATATCC-TTTGGATGCAGTTTATGACACCCTTGAGGATGTACCTGAAGATgtaagaaaga ... gtctatgcagGTAAAAGCAAATAAGCGTTATGCTGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTGCCAGATGGTTCTTTGATGGAGATCACCAAAATATATCCTTTGGATGCAGTTTATGACACCCTTGAGGATGTACCTGAAGATgtaagaaagaagtttattgtcctataataaatatgaaaaatggtcaagtgcatcctcagtatatcattgttttatgagtctatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA