Sequence
atgc intronic sequence ATGC exonic sequenceGTGTGAGGCCTTCTCAACATATCCTCGAACATATGATTTGATACATGCTCATGGAGTCTTCAGCATGTACATGGGCAAgtaagttttcacttcatgctatttcaacaatgatgctcaccattggctgtcttcttgtcctttttcctgtaacaaagagaagttatttcaggaaactttc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0124g00530.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G346138_T01 (Zea mays), 5'ss of exon 5
GTGTGAGGCCTTCTCAACATATCCTCGAACATATGATTTGATACATGCTCATGGAGTCTTCAGCATGTACATGGGCAAgtaagttttc-----acttcatgctatttcaacaatgatgctcaccattggctgtcttcttgtcctttttcctgtaacaaagagaagttatttcaggaaactttc----------------------------------------------------------------------
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GTGCGAGGCCTTCTCTACTTATCCACGAACATACGATCTGATACATGGTAATGGAATCTTCAGCTCCCATATTCACAAgtaagtgacccgctaacttggcgatgttaaaaagccactgaaagagaacaacaaaaggcatagactgcgatctgcga-agcaagtgaacaattcaagtagcacacactagtcccttgcagttaaattaagtcccggctcagccatccatcttgacacgaaactattctctgtcag
upper sequence: Vv05s0124g00530.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA08G47710.1 (Glycine max), 5'ss of exon 5
GTGTGAGGCCTTCTCAACATATCCTCGAACATATGATTTGATACATGCTCATGGAGTCTTCAGCATGTACATGGGCAAgtaagttttcacttcatgctatttcaacaatgatgctcaccattggctgtcttcttgtcctttttcctgtaacaaagagaagttatttcaggaaactttc-----
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GTGTGAGCCCTTTTCGACATACCCACGAACATATGACTTGATACATGCTAGTGGTGTATTCAGTATGTATATGGACAAgtaagcttaa---tcatagcagtatagattctttgagcaatctgtgttgtttcgatcttcaatgttct-taatttaca-agtttatgatataaaaattgcttgct
upper sequence: Vv05s0124g00530.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA18G53780.1 (Glycine max), 5'ss of exon 5
GTGTGAGGCCTTCTCAACATATCCTCGAACATATGATTTGATACATGCTCATGGAGTCTTCAGCATGTACATGGGCAAgtaagttttcacttcatgctatttcaacaatgatgctcaccattggctgtcttcttgtcctttttcctgtaacaaagagaagttatttcaggaaactttc----
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GTGTGAGCCCTTTTCGACATACCCACGAACATATGACTTGATACATGCTAGTGGTGTATTCAGTATGTATATGGACAAgtaagcttaa---tcatacgagtatagattatttgagcaaactgtgttgtttt-ttatcttcaatgttcttaatttccaagtttatgacatcaaagttgcaaacMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|352764734|gb|FQ471794.1|FQ471794EST: ACATATGATTTGATACATGCTCATGGAGTCTTCAGCATGTACATGGGCAA ATGTGACATTCTTGATATTCTCTTTGAGATGTACCGAATTCTTCGTCCTGA
genomic: ACATATGATTTGATACATGCTCATGGAGTCTTCAGCATGTACATGGGCAAgtaagttttc ... cctcatacagATGTGACATTCTTGATATTCTCTTTGAGATGTACCGAATTCTTCGTCCTGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGTGAGGCCTTCTCAACATATCCTCGAACATATGATTTGATACATGCTCATGGAGTCTTCAGCATGTACATGGGCAAgtaagttttcacttcatgctatttcaacaatgatgctcaccattggctgtcttcttgtcctttttcctgtaacaaagagaagttatttcaggaaactttc
- - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacaatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aggaaac