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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGATCTGTTGAAGAACAAGTTTGGTTTTGATGAGGCTTTCAACTATAAAGAAGAGCAGGATTTGGAAGCTTGTTTGAAAAGgttagtattaattttattctagaaaaactaacagtatccctttgaagttctaatcaattttaagctcaaagaaatggacaaagaccaccccccctccccc...

Basic information

species Vitis vinifera
transcript Vv05s0094g01120.t01
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110698905|gb|EE076939.1|EE076939
EST:     GAGGCTTTCAACTATAAAGAAGAGCAGGATTTGGAAGCTTGTTTGAAAAG                         GTACTTCCCTGAAGGCATTGATATCTACTTTGAGAATGTAGGGGGGAAAGA
genomic: GAGGCTTTCAACTATAAAGAAGAGCAGGATTTGGAAGCTTGTTTGAAAAGgttagtatta ... gattttccagGTACTTCCCTGAAGGCATTGATATCTACTTTGAGAATGTAGGGGG-AAAGA
EST: gi|110375549|gb|EC940548.1|EC940548
EST:     GAGGCTTTCAACTATAAAGAAGAGCAGGATTTGGAAGCTTGTTTGAAAAG                         GTACTTCCCTGAAGGCATTGATATCTACTTTGAGAATGTAGGGGGAAAGAT
genomic: GAGGCTTTCAACTATAAAGAAGAGCAGGATTTGGAAGCTTGTTTGAAAAGgttagtatta ... gattttccagGTACTTCCCTGAAGGCATTGATATCTACTTTGAGAATGTAGGGGGAAAGAT
EST: gi|110363836|gb|EC927458.1|EC927458
EST:     GAGGCTTTCAACTATAAAGAAGAGCAGGATTTGGAAGCTTGTTTGAAAAG                         GTACTTCCCTGAAGGCATTGATATCTACTTTGAGAATGTAGGGGGAAAGAT
genomic: GAGGCTTTCAACTATAAAGAAGAGCAGGATTTGGAAGCTTGTTTGAAAAGgttagtatta ... gattttccagGTACTTCCCTGAAGGCATTGATATCTACTTTGAGAATGTAGGGGGAAAGAT
EST: gi|28958567|gb|CB339278.1|CB339278
EST:     TTTC-ACTATAAAGAAGAGCAGGATTTGGAAGCTTGTTAGAAAAG                         GTACTTCCCTGAAGGCATTGATATCTACTTTGAGAATGTAGGGGGAAAGAT
genomic: TTTCAACTATAAAGAAGAGCAGGATTTGGAAGCTTGTTTGAAAAGgttagtatta ... gattttccagGTACTTCCCTGAAGGCATTGATATCTACTTTGAGAATGTAGGGGGAAAGAT
EST: gi|110382519|gb|EC946817.1|EC946817
EST:     GGAAGCTTGTTTGAAAAG                         GTACTTCCCTGAAGGCATTGATATCTACTTTGAGAATGTAGGGGGAAAGAT
genomic: GGAAGCTTGTTTGAAAAGgttagtatta ... gattttccagGTACTTCCCTGAAGGCATTGATATCTACTTTGAGAATGTAGGGGGAAAGAT
EST: gi|160482107|gb|EY255084.1|EY255084
EST:     GAGGCTTTCAACTATAAAGAAGAGCAGGATTTGGAAGCTTGTTTGAAAAG                         GTACTTCCCTGAAGGCATTGATATCTACTTTGAGAATGTAGGGGGAAAGAT
genomic: GAGGCTTTCAACTATAAAGAAGAGCAGGATTTGGAAGCTTGTTTGAAAAGgttagtatta ... gattttccagGTACTTCCCTGAAGGCATTGATATCTACTTTGAGAATGTAGGGGGAAAGAT
EST: gi|77580897|gb|DV219372.1|DV219372
EST:     GAGGCTTTCAACTATAAAGAAGAGCAGGATTTGGAAGCTTGTTTGAAAAG                         GTACTTCCCTGAAGGCATTGATATCTACTTTGAGAATGTAGGGGGAAAGAT
genomic: GAGGCTTTCAACTATAAAGAAGAGCAGGATTTGGAAGCTTGTTTGAAAAGgttagtatta ... gattttccagGTACTTCCCTGAAGGCATTGATATCTACTTTGAGAATGTAGGGGGAAAGAT
EST: gi|110391629|gb|EC956617.1|EC956617
EST:     GAGGCTTTCAACTATAAAGAAGAGCAGGATTTGGAAGCTTGTTTGAAAAG                         GTACTTCCCTGAAGGCATTGATATCTACTTTGAGAATGTAGGGGGAAAGAT
genomic: GAGGCTTTCAACTATAAAGAAGAGCAGGATTTGGAAGCTTGTTTGAAAAGgttagtatta ... gattttccagGTACTTCCCTGAAGGCATTGATATCTACTTTGAGAATGTAGGGGGAAAGAT
EST: gi|32265321|gb|CD716910.1|CD716910
EST:     GAGGCTTTCAACTATAAAGAAGAGCAGGATTTGGAAGCTTGTTTGAAAAG                         GTACTTCCCTGAAGGCATTGATATCTACTTTGAGAATGTAGGGGGAAAGAT
genomic: GAGGCTTTCAACTATAAAGAAGAGCAGGATTTGGAAGCTTGTTTGAAAAGgttagtatta ... gattttccagGTACTTCCCTGAAGGCATTGATATCTACTTTGAGAATGTAGGGGGAAAGAT
EST: gi|110389320|gb|EC954148.1|EC954148
EST:     GAGGCTTTCAACTATAAAGACTATCAGGATTTGGAAGCTTGTTTGAAAAG                         GTACTTCCCTGAAGGCATTGATATCTACTTTGAGAATGTAGGGGGAAAGAT
genomic: GAGGCTTTCAACTATAAAGAAGAGCAGGATTTGGAAGCTTGTTTGAAAAGgttagtatta ... gattttccagGTACTTCCCTGAAGGCATTGATATCTACTTTGAGAATGTAGGGGGAAAGAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTGATCTGTTGAAGAACAAGTTTGGTTTTGATGAGGCTTTCAACTATAAAGAAGAGCAGGATTTGGAAGCTTGTTTGAAAAGgttagtattaattttattctagaaaaactaacagtatccctttgaagttctaatcaattttaagctcaaagaaatggacaaagaccaccccccctccccc

- - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccccccc