Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTCGGCAGACATTCACTGAAAAGTTCCCACAAGTTCACCCTGTAGCTATCGATCTTGTTGAAAAGATGTTGACATTTGATCCCAGGCAGAGGATTACAGgtgagtgttttccctaaatggtctcctcattcatatacacatcaacatcaataatatgatgaatggcattgatcatgctcccggttatttaattgatgca...

Basic information

species Vitis vinifera
transcript Vv05s0094g00900.t01
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30131434|gb|CB916773.1|CB916773
EST:     CGATCTTGTTGAAAAGATGTTGACATTTGATCCCAGGCAGAGGATTACAG                         NTGAAGAAGCCCTAGCACATCCCTATTTAACGT
genomic: CGATCTTGTTGAAAAGATGTTGACATTTGATCCCAGGCAGAGGATTACAGgtgagtgttt ... gtgtgagcagTTGAGGAAGCCCTAGCACATCCCTATTTAACGT
EST: gi|34364337|gb|CF405922.1|CF405922
EST:     CGATCTTGTTGAAAAGATGTTGACATTTGATCCCAGGCAGAGGATTACAG                         TTGAGGAAGCCCTAGCACATCCCTATTTAACGTCTCTGCACGACATCAGTG
genomic: CGATCTTGTTGAAAAGATGTTGACATTTGATCCCAGGCAGAGGATTACAGgtgagtgttt ... gtgtgagcagTTGAGGAAGCCCTAGCACATCCCTATTTAACGTCTCTGCACGACATCAGTG
EST: gi|110411727|gb|EC977450.1|EC977450
EST:     CGATCTTGTTGAAAAGATGTTGACATTTGATCCCAGGCAGAGGATTACAG                         TTGAAGAAGCCCTAGCACATCCCTATTTAACGTCTCTGCACGACATCAGTG
genomic: CGATCTTGTTGAAAAGATGTTGACATTTGATCCCAGGCAGAGGATTACAGgtgagtgttt ... gtgtgagcagTTGAGGAAGCCCTAGCACATCCCTATTTAACGTCTCTGCACGACATCAGTG
EST: gi|33404655|gb|CF210282.1|CF210282
EST:     CGATCTTGTTGAAAAGATGTTGACATTTGATCCCAGGCAGAGGATTACAG                         TTGAAGAAGCCCTAGCACATCCCTATTTAACGTCTCTGCACGACATCAGTG
genomic: CGATCTTGTTGAAAAGATGTTGACATTTGATCCCAGGCAGAGGATTACAGgtgagtgttt ... gtgtgagcagTTGAGGAAGCCCTAGCACATCCCTATTTAACGTCTCTGCACGACATCAGTG
EST: gi|110705998|gb|EE083484.1|EE083484
EST:     CGATCTTGTTGAAAAGATGTTGACATTTGATCCCAGGCAGAGGATTACAG                         TTGAGGAAGCCCTAGCACATCCCTATTTAACGTCTCTGCACGACATCAGTG
genomic: CGATCTTGTTGAAAAGATGTTGACATTTGATCCCAGGCAGAGGATTACAGgtgagtgttt ... gtgtgagcagTTGAGGAAGCCCTAGCACATCCCTATTTAACGTCTCTGCACGACATCAGTG
EST: gi|30126013|gb|CB911352.1|CB911352
EST:     CGATCTTGTTGAAAAGATGTTGACATTTGATCCCAGGCAGAGGATTACAG                         TTGAAGAAGCCCTAGCACATCCCTATTTAACGTCTCTGCACGACATCAGTG
genomic: CGATCTTGTTGAAAAGATGTTGACATTTGATCCCAGGCAGAGGATTACAGgtgagtgttt ... gtgtgagcagTTGAGGAAGCCCTAGCACATCCCTATTTAACGTCTCTGCACGACATCAGTG
EST: gi|352785757|gb|FQ475760.1|FQ475760
EST:     CGATCTTGTTGAAAAGATGTTGACATTTGATCCCAGGCAGAGGATTACAG                         TTGAGGAAGCCCTAGCACATCCCTATTTAACGTCTCTGCACGACATCAGTG
genomic: CGATCTTGTTGAAAAGATGTTGACATTTGATCCCAGGCAGAGGATTACAGgtgagtgttt ... gtgtgagcagTTGAGGAAGCCCTAGCACATCCCTATTTAACGTCTCTGCACGACATCAGTG
EST: gi|34363900|gb|CF405485.1|CF405485
EST:     CGATCTTGTTGAAAAGATGTTGACATTTGATCCCAGGCAGAGGATTACAG                         TTGAAGAAGCCCTAGCACATCCCTATTTAACGTCTCTGCACGACATCAGTG
genomic: CGATCTTGTTGAAAAGATGTTGACATTTGATCCCAGGCAGAGGATTACAGgtgagtgttt ... gtgtgagcagTTGAGGAAGCCCTAGCACATCCCTATTTAACGTCTCTGCACGACATCAGTG
EST: gi|110405255|gb|EC970794.1|EC970794
EST:     CGATCTTGTTGAAAAGATGTTGACATTTGATCCCAGGCAGAGGATTACAG                         TTGAAGAAGCCCTAGCACATCCCTATTTAACGTCTCTGCACGACATCAGTG
genomic: CGATCTTGTTGAAAAGATGTTGACATTTGATCCCAGGCAGAGGATTACAGgtgagtgttt ... gtgtgagcagTTGAGGAAGCCCTAGCACATCCCTATTTAACGTCTCTGCACGACATCAGTG
EST: gi|33408675|gb|CF214302.1|CF214302
EST:     CGATCTTGTTGAAAAGATGTTGCCATTTGATCCCAGGCAGAGGATTACAG                         TTGAAGAAGCCCTAGCACATCCCTATTTAACGTCTCTGCACGACATCAGTG
genomic: CGATCTTGTTGAAAAGATGTTGACATTTGATCCCAGGCAGAGGATTACAGgtgagtgttt ... gtgtgagcagTTGAGGAAGCCCTAGCACATCCCTATTTAACGTCTCTGCACGACATCAGTG
EST: gi|33408416|gb|CF214043.1|CF214043
EST:     CGATCTTGTTGAAAAGATGTTGACATTTGATCCCAGGCAGAGGATTACAG                         TTGAAGAAGCCCTAGCACATCCCTATTTAACGTCTCTGCACGACATCAGTG
genomic: CGATCTTGTTGAAAAGATGTTGACATTTGATCCCAGGCAGAGGATTACAGgtgagtgttt ... gtgtgagcagTTGAGGAAGCCCTAGCACATCCCTATTTAACGTCTCTGCACGACATCAGTG
EST: gi|110374605|gb|EC939483.1|EC939483
EST:     CGATCTTGTTGAAAAGATGTTGACATTTGATCCCAGGCAGAGGATTACAG                         TTGAAGAAGCCCTAGCACATCCCTATTTAACGTCTCTGCACGACATCAGTG
genomic: CGATCTTGTTGAAAAGATGTTGACATTTGATCCCAGGCAGAGGATTACAGgtgagtgttt ... gtgtgagcagTTGAGGAAGCCCTAGCACATCCCTATTTAACGTCTCTGCACGACATCAGTG
EST: gi|110403029|gb|EC964083.1|EC964083
EST:     CGATCTTGTTGAAAAGATGTTGACATTTGATCCCAGGCAGAGGATTACAG                         TTGAAGAAGCCCTAGCACATCCCTATTTAACGTCTCTGCACGACATCAGTG
genomic: CGATCTTGTTGAAAAGATGTTGACATTTGATCCCAGGCAGAGGATTACAGgtgagtgttt ... gtgtgagcagTTGAGGAAGCCCTAGCACATCCCTATTTAACGTCTCTGCACGACATCAGTG
EST: gi|110715356|gb|EE093309.1|EE093309
EST:     CGATCTTGTTGAAAAGATGTTGACATTTGATCCCAGGCAGAGGATTACAG                         TTGAGGAAGCCCTAGCACATCCCTATTTAACGTCTCTGCACGACATCAGTG
genomic: CGATCTTGTTGAAAAGATGTTGACATTTGATCCCAGGCAGAGGATTACAGgtgagtgttt ... gtgtgagcagTTGAGGAAGCCCTAGCACATCCCTATTTAACGTCTCTGCACGACATCAGTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGTCGGCAGACATTCACTGAAAAGTTCCCACAAGTTCACCCTGTAGCTATCGATCTTGTTGAAAAGATGTTGACATTTGATCCCAGGCAGAGGATTACAGgtgagtgttttccctaaatggtctcctcattcatatacacatcaacatcaataatatgatgaatggcattgatcatgctcccggttatttaattgatgca

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacatcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgatgaa