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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGAAAAGGAAGCGCCTTGAGTATCTTGACTGTGTTTCTCAGTATTATGACATTCCAGACACTGAACGCTCGGATGATGAAATCAACATGCTACGCCAGgtatatctaatgctaattgaccacccaattatcacttctgtccaattctttatgatgatctcttctaaccatgtgcctgtattgcctatgttgttag

Basic information

species Vitis vinifera
transcript Vv05s0094g00070.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0094g00070.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os09g34040.1 (Oryza sativa), 5'ss of exon 5
TCTGAAAAGGAAGCGCCTTGAGTATCTTGACTGTGTTTCTCAGTATTATGACATTCCAGACACTGAACGCTCGGATGATGAAATCAACATGCTACGCCAGgtatatctaatgctaattgaccacccaattatcacttctgtccaattctttatgatgatctcttctaaccatgtgcctgtattgcctatgttgttag
|||||  |||||  | ||||||||  |||| ||||||||||| || ||||| ||||| || ||||||||||| ||||| || || || ||||| || ||||| |  |      |  | |||     | ||  |  ||  |     | |   ||  |          ||  || |      || |  |   ||||   
TCTGACGAGGAAAAGACTTGAGTACGTTGAATGTGTTTCTCAATACTATGATATTCCTGATACTGAACGCTCTGATGAAGAGATTAATATGCTTCGACAGgtttcccctgactttttcgactttgaatttgcctttttaggt---tccccaatagttcatgtaatcaattatataaactcatggtttcacttgtag-

upper sequence: Vv05s0094g00070.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G142806_T01 (Zea mays), 5'ss of exon 6
TCTGAAAAGGAAGCGCCTTGAGTATCTTGACTGTGTTTCTCAGTATTATGACATTCCAGACACTGAACGCTCGGATGATGAAATCAACATGCTACGCCAGgta---tatctaa--tgctaattgaccacccaattatcacttctgtccaattctttatgatgatctcttctaaccatg--tgcctgtattgcctatgttgttag
||| | ||||||  | || |||||  | || ||||||||||| || ||||| |||||||| | ||||||||| ||||| ||||| | |||||| |||||||||   | | | |  ||  | |||   || |           || |    ||||| |     |||   |   ||| |   | | ||||   | | |  ||    
TCTAACAAGGAAAAGGCTGGAGTACGTGGAATGTGTTTCTCAATACTATGATATTCCAGATAGTGAACGCTCAGATGAAGAAATTACCATGCTTCGCCAGgtaacctttttgacctgtaacttggtgactcgtcctctctacctatttttttcttgaaatgaatcatcttacaccttttttacttgtacatcttgttctgcag-

upper sequence: Vv05s0094g00070.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA15G03200.1 (Glycine max), 5'ss of exon 5
TCTGAAAAGGAAGCGCCTTGAGTATCTTGACTGTGTTTCTCAGTATTATGACATTCCAGACACTGAACGCTCGGATGATGAAATCAACATGCTACGCCAGgtatatctaatgctaattgaccacccaattatcacttctgtccaattctttatgatgatctcttctaaccatgtgcctgtattgcctatgttgttag
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || || ||||||||||||||||| ||||| ||||| ||||||||||    ||     |        | || |   | |  ||   ||     || | |  | | || | || |  ||| |   ||   |   |||||||
TTTGAAAAGGAAGCGCCTTGAGTATCTTGACTGTGTTTCTCAGTATTATGATATTCCTGATACAGAACGCTCGGATGATGAGATCAATATGCTTCGCCAGgtattctcaaactataacatatttctaactgg-attgatggggaaaa---taaggttctttatttttactacttgcat---ttttatgatttgttag

upper sequence: Vv05s0094g00070.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA13G42180.1 (Glycine max), 5'ss of exon 5
TCTGAAAAGGAAGCGCCTTGAGTATCTTGACTGTGTTTCTCAGTATTATGACATTCCAGACACTGAACGCTCGGATGATGAAATCAACATGCTACGCCAGgtatatctaatgctaattgaccacccaattatcacttctgtccaattctttatgatgat-ctcttctaaccatgtgcctgtattgcctatgttgttag
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || || |||||||| |||||||| ||||| ||||| |||||||||| ||| |  |||       ||  | || | |||   |   |  | |  |  || |  ||||||        | | || | |       |||||||
TTTGAAAAGGAAGCGCCTTGAGTATCTTGACTGTGTTTCTCAGTATTATGATATTCCTGATACAGAACGCTCAGATGATGAGATCAATATGCTTCGCCAGgtat-tctcaaacta-----taacatatttctaact---ggataggtttggaaaataaggctcttcatttttactacttgcaattttatgattgttag

upper sequence: Vv05s0094g00070.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA11G13330.2 (Glycine max), 5'ss of exon 5
TCTGAAAAGGAAGCGCCTTGAGTATCTTGACTGTGTTTCTCAGTATTATGACATTCCAGACACTGAACGCTCGGATGATGAAATCAACATGCTACGCCAGgtatatctaatgctaattgaccacccaattatcacttctgtccaattctttatgatgatctcttctaaccatg--tgcctgtattgcctatgttgttag
||| | |||||||||||||||||||||||||||| |||||||||||||||| ||||| || || ||||| || ||||||||  |||||||||| |  |||||||  | |    ||||  |    || ||  | | |        |||| | |  || ||      |     ||  ||     ||||  ||| |||||||
TCTAAGAAGGAAGCGCCTTGAGTATCTTGACTGTATTTCTCAGTATTATGATATTCCTGATACAGAACGTTCAGATGATGAGGTCAACATGCTTCATCAGgtattccgaggtttaatatatt--cctatcctaatt--------attcatgaaaataattgtccttgtttttgactgttatcattgtatat-ttgttag

upper sequence: Vv05s0094g00070.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA12G05350.1 (Glycine max), 5'ss of exon 5
TCTGAAAAGGAAGCGCCTTGAGTATCTTGACTGTGTTTCTCAGTATTATGACATTCCAGACACTGAACGCTCGGATGATGAAATCAACATGCTACGCCAGgtatatctaatgctaattgaccacccaattatcacttctgtccaattctttatgatgatctcttctaaccatgtgcctgtattgcctatgttgttag
||| | |||||| ||||||||||||||||||||| |||||||||||||||| ||||| || || ||||| || ||||| ||  |||||||||| || |||||||  | |    ||||  |   |     ||||     | | ||      |||  |  |   || | ||  | || |   ||||  ||| |||||||
TCTAAGAAGGAAACGCCTTGAGTATCTTGACTGTATTTCTCAGTATTATGATATTCCTGATACAGAACGTTCAGATGACGAGGTCAACATGCTTCGTCAGgtattcccaggtttaatatattcc-----tatcttaattattcatgaaaatattgtccttgttttttactgt-tgtc---attgtatat-ttgttag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71861105|gb|DT010160.1|DT010160
EST:     ACATTCCAGACACTGAACGCTCGGATGATGAAATCAACATGCTACGCCAG                         ATTGCTGTTGATTGTCCAAGAACGGTGCCTGATGTTTCTTTCTTTCAAGAA
genomic: ACATTCCAGACACTGAACGCTCGGATGATGAAATCAACATGCTACGCCAGgtatatctaa ... atgttgttagATTGCTGTTGATTGTCCAAGAACGGTGCCTGATGTTTCTTTCTTTCAAGAA