Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATGATGTCGGTCATCTGGGTAAAAGCACTGCAGTTGTTTCCTCTTCTGGGCCATCTGAAAGgttcttgatgttttctttccttatttcctttggcccctttgagttacgtcaattattcttctattcaggcaaatacttatgtttattaatttacttcttg...

Basic information

species Vitis vinifera
transcript Vv05s0077g02310.t01
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71863616|gb|DT012671.1|DT012671
EST:     CATCTGGGTAAAAGCACTGCAGTTGTTTCCTCTTCTGGGCCATCTGAAAG                         GAACCTATCAACTTCAGCTATCATGGAAAGAATCCCAAGCAAATGGCCACG
genomic: CATCTGGGTAAAAGCACTGCAGTTGTTTCCTCTTCTGGGCCATCTGAAAGgttcttgatg ... tgttttctagGAACCTATCAACTTCAGCTATCATGGAAAGAATCCCAAGCAAATGGCCACG
EST: gi|352773658|gb|FQ472440.1|FQ472440
EST:     CATCTGGGTAAAAGCACTGCAGTTGTTTCCTCGTCTGGGCCATCTGAAAG                         GAACCTATCAACT
genomic: CATCTGGGTAAAAGCACTGCAGTTGTTTCCTCTTCTGGGCCATCTGAAAGgttcttgatg ... tgttttctagGAACCTATCAACT
EST: gi|30125771|gb|CB911110.1|CB911110
EST:     CATCTGGGTAAAAGCACTGCAGTTGTTTCCTCTTCTGGGCCATCTGAAAG                         GAACCTATCAACTTCAGCTATCATGGAAAGAATCCCAAGCAAATGGCCACG
genomic: CATCTGGGTAAAAGCACTGCAGTTGTTTCCTCTTCTGGGCCATCTGAAAGgttcttgatg ... tgttttctagGAACCTATCAACTTCAGCTATCATGGAAAGAATCCCAAGCAAATGGCCACG
EST: gi|352785394|gb|FQ477608.1|FQ477608
EST:     CATCTGGGTAAAAGCACTGCAGTTGTTTCCTCTTCTGGGCCATCTGAAAG                         GAGCCTATCAACTTCAGCTATCATGGAAAGAATCCCAAGCAAATGGCCACG
genomic: CATCTGGGTAAAAGCACTGCAGTTGTTTCCTCTTCTGGGCCATCTGAAAGgttcttgatg ... tgttttctagGAACCTATCAACTTCAGCTATCATGGAAAGAATCCCAAGCAAATGGCCACG
EST: gi|110688178|gb|EE066434.1|EE066434
EST:     CATCTGGGTAAAAGCACTGCAGTTGTTTCCTCTTCTGGGCCATCTGAAAG                         GAACCTATCAACTTCAGCTATCATGGAAAGAATCCCAAGCAAATGGCCACG
genomic: CATCTGGGTAAAAGCACTGCAGTTGTTTCCTCTTCTGGGCCATCTGAAAGgttcttgatg ... tgttttctagGAACCTATCAACTTCAGCTATCATGGAAAGAATCCCAAGCAAATGGCCACG
EST: gi|22010813|gb|BQ795847.1|BQ795847
EST:     CATCTGGGTAAAAGCACTGCAGTTGTTTCCTCTTCTGGGCCATCTGAAAG                         GAACCTATCAACTTCAGCTATCATGGAAAGAATCCCAAGCAAATGGCCACG
genomic: CATCTGGGTAAAAGCACTGCAGTTGTTTCCTCTTCTGGGCCATCTGAAAGgttcttgatg ... tgttttctagGAACCTATCAACTTCAGCTATCATGGAAAGAATCCCAAGCAAATGGCCACG
EST: gi|71858909|gb|DT007964.1|DT007964
EST:     CATCTGGGTAAAAGCACTGCAGTTGTTTCCTCTTCTGGGCCATCTGAAAG                         GAACCTATCAACTTCAGCTATCATGGAAAGAATCCCAAGCAAATGGCCACG
genomic: CATCTGGGTAAAAGCACTGCAGTTGTTTCCTCTTCTGGGCCATCTGAAAGgttcttgatg ... tgttttctagGAACCTATCAACTTCAGCTATCATGGAAAGAATCCCAAGCAAATGGCCACG
EST: gi|110728878|gb|EE104832.1|EE104832
EST:     CATCTGGGTAAAAGCACTGCAGTTATTTCCTCTTCTGGGCCATCTGAAAG                         GAACCTATCAACTTCAGCTATCATGGAAAGAATCCCAAGCAAATGGCCACG
genomic: CATCTGGGTAAAAGCACTGCAGTTGTTTCCTCTTCTGGGCCATCTGAAAGgttcttgatg ... tgttttctagGAACCTATCAACTTCAGCTATCATGGAAAGAATCCCAAGCAAATGGCCACG
EST: gi|110711785|gb|EE088658.1|EE088658
EST:     CATCTGGGTAAAAGCACTGCAGTTATTTCCTCTTCTGGGCCATCTGAAAG                         GAACCTATCAACTTCAGCTATCATGGAAAGAATCCCAAGCAAATGGCCACG
genomic: CATCTGGGTAAAAGCACTGCAGTTGTTTCCTCTTCTGGGCCATCTGAAAGgttcttgatg ... tgttttctagGAACCTATCAACTTCAGCTATCATGGAAAGAATCCCAAGCAAATGGCCACG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAATGATGTCGGTCATCTGGGTAAAAGCACTGCAGTTGTTTCCTCTTCTGGGCCATCTGAAAGgttcttgatgttttctttccttatttcctttggcccctttgagttacgtcaattattcttctattcaggcaaatacttatgtttattaatttacttcttg

- - - - - - - - - - - - - -  CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aggcaaa