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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATGTATTTGATGTGGGAGACAAGAAAGGAACAATCATTGATAGTGGTACAACCTTGGCTTATCTCCCAGAGGTGGTTTATGATCAGTTATTGAGTAAGgtaggtgataaacctgcccatataaataaaaaataaatttgtttgggattctctttataaattgcgtacttacatagtttaatattcttttttttttcccctttttttag

Basic information

species Vitis vinifera
transcript Vv05s0062g01370.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0062g01370.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os02g27360.2 (Oryza sativa), 5'ss of exon 5
AGATGTATTTGATGTGGGAGACAAGAAAGGAACAATCATTGATAGTGGTACAACCTTGGCTTATCTCCCAGAGGTGGTTTATGATCAGTTATTGAGTAAGgtaggtgataaacctgcccatataaataaaaaataaatttgtttgggattctctttataaattgcgtacttacatagtttaatattcttttttttttcccctttttttag
| || | || |||   ||  |||  ||||| || |||||||||||||| ||||| ||||| ||| ||||||||| ||||||| |     ||||    | |||| |  ||   |||  |   || |||          || |||  |  |  | | |  | ||       ||| | | ||| ||  |  || |||| |             
AAATATTTTCGATTCAGGTAACAGTAAAGGTACCATCATTGATAGTGGGACAACATTGGCGTATGTCCCAGAGGGGGTTTATAAGGCTCTATTTGCCATGgtacgaaat---cctttctgaatcaat------cctcttagttgagagtgatttgtgcacatca-----ttatacattttcatgattattgttttgtag-----------

upper sequence: Vv05s0062g01370.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA18G51920.1 (Glycine max), 5'ss of exon 5
-AGATGTATTTGATGTGGGAGACAAGAAAGGAACAATCATTGATAGTGGTACAACCTTGGCTTATCTCCCAGAGGTGGTTTATGATCAGTTATTGAGTAAGgtaggtgataaacctgcccatataaataaaaaataaatttgtttgggattctctttataaattgcgtacttacatagtttaatattcttttttttttcccctttttttag
 ||||  ||        |||||||  ||||| ||||| ||||| ||||||||||||||||| ||||| || || |   ||||||| | | || |   |||||||  | | |  | |    || |    ||  | ||||||| |     |||  | ||  |  |  |  | || | |  | |  |                           
CAGATACATCAACACAAGGAGACAGAAAAGGGACAATAATTGACAGTGGTACAACCTTGGCCTATCTGCCTGAAGGAATTTATGAGCCGCTAGTATATAAggtacataaaagtcttaa--attttgcaaattactaaatttct---aaatttacattgcagttgtctgaattgctttctcttgtta-------------------------