Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGCTTTCACTCATCAAGATTTTGCAGGCCATAAGGGCACAATCCGAACAGGGGATGTGCAGgtaaagaattggatcagtggaaccaagatttgatcattttgatgtgtaaatcctttctctaacatgttgattctgtgcag

Basic information

species Vitis vinifera
transcript Vv05s0062g01190.t01
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71856798|gb|DT005853.1|DT005853
EST:     ATCAAGATTTTGCAGGCCATAAGGGCACAATCCGAACAGGGGATGTGCAG                         TGGATGACTGCAGGCAGAGGCATAATCCACTCTGAAATGCCTGCAGATGAA
genomic: ATCAAGATTTTGCAGGCCATAAGGGCACAATCCGAACAGGGGATGTGCAGgtaaagaatt ... ttctgtgcagTGGATGACTGCAGGCAGAGGCATAATCCACTCTGAAATGCCTGCAGATGAA
EST: gi|71880887|gb|DT029942.1|DT029942
EST:     ATCAAGATTTTGCAGGCCATAAGGGCACAATCCGAACAGGGGATGTGCAG                         TGGATGACTGCAGGCAGAGGCATAATCCACTCTGAAATGCCTGCAGATGAA
genomic: ATCAAGATTTTGCAGGCCATAAGGGCACAATCCGAACAGGGGATGTGCAGgtaaagaatt ... ttctgtgcagTGGATGACTGCAGGCAGAGGCATAATCCACTCTGAAATGCCTGCAGATGAA
EST: gi|161718051|gb|FC067586.1|FC067586
EST:     ATCAAGATTTTGCAGGCCATAAGGGCACAATCCGAACAGGGGATGTGCAG                         TGGATGACTGCAGGCAGAGGCATAATCCACTCTGAAATGCCTGCAGATGAA
genomic: ATCAAGATTTTGCAGGCCATAAGGGCACAATCCGAACAGGGGATGTGCAGgtaaagaatt ... ttctgtgcagTGGATGACTGCAGGCAGAGGCATAATCCACTCTGAAATGCCTGCAGATGAA