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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGACCTAGAGAATTCATTACTAAGTGCTTCCAACCAGCAGAACCGGTTAAACCCTGCCTTCAGACAGGGGGATATTCAGgtattgttttggatgccactttgctggtggatcttctgtttttgacacccctttttggtttccatcttgtag

Basic information

species Vitis vinifera
transcript Vv05s0062g00220.t01
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349822773|gb|FQ398160.1|FQ398160
EST:     CCAACCAGCAGAACCGGTTAAACCCTGCCTTCAGACAGGGGGATATTCAA                         GTTGCTGTCTTTGAGGAAAATAATAA-GGGGATGCAGGAGAATGCTA
genomic: CCAACCAGCAGAACCGGTTAAACCCTGCCTTCAGACAGGGGGATATTCAGgtattgtttt ... catcttgtagGTTGCTGTCTTTGAGGAAA-TAATAAAGGGGATGCAGGAGAATGCTA
EST: gi|349816841|gb|FQ399709.1|FQ399709
EST:     CCAACCAGCAGAACCGGTTAAACCCTGCCTTCAGACAGGGGGATATTCAG                         GTTGCTGTCTTTGAGGAAATAAAAAAGGGGATGCAG
genomic: CCAACCAGCAGAACCGGTTAAACCCTGCCTTCAGACAGGGGGATATTCAGgtattgtttt ... catcttgtagGTTGCTGTCTTTGAGGAAATAATAAAGGGGATGCAG
EST: gi|110412506|gb|EC978256.1|EC978256
EST:     CCAACCAGCAGAACCGGTTAAACCCTGCCTTCAGACAGGGGGATATTCAG                         GTTGCTGTCTTTGAGGAAATAATAAAGGGGATGCAG
genomic: CCAACCAGCAGAACCGGTTAAACCCTGCCTTCAGACAGGGGGATATTCAGgtattgtttt ... catcttgtagGTTGCTGTCTTTGAGGAAATAATAAAGGGGATGCAG
EST: gi|110417406|gb|EC983458.1|EC983458
EST:     CCAACCAGCAGAACCGGTTAAACCCTGCCTTCAGACAGGGGGATATTCAG                         GTTGCTGTCTTTGAGGAAATAATAAAGGGGATGCAG
genomic: CCAACCAGCAGAACCGGTTAAACCCTGCCTTCAGACAGGGGGATATTCAGgtattgtttt ... catcttgtagGTTGCTGTCTTTGAGGAAATAATAAAGGGGATGCAG
EST: gi|349830095|gb|FQ420355.1|FQ420355
EST:     CCAACCAGCAGAACCGGTTAAACCCTGCCTTCAGACAGGGGGATATTCAG                         GTTGCTGTCTTTGAGGAAATAATAAAGGGGATGCAG
genomic: CCAACCAGCAGAACCGGTTAAACCCTGCCTTCAGACAGGGGGATATTCAGgtattgtttt ... catcttgtagGTTGCTGTCTTTGAGGAAATAATAAAGGGGATGCAG
EST: gi|110695067|gb|EE072660.1|EE072660
EST:     CCTGCCTTCAGACAGGGGGATATTCAG                         GTTGCTGTCTTTGAGGAAATAATAAAGGGGATGCAG
genomic: CCTGCCTTCAGACAGGGGGATATTCAGgtattgtttt ... catcttgtagGTTGCTGTCTTTGAGGAAATAATAAAGGGGATGCAG