1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ATGCCGCAGCCCAGTAATGAACAATCAGTTGCATCATCGGTTATGTTTGAAAAGCCTGCATCAGAGGTAGCAGAGGAGGTTTCAGGAGTAGAAGATGAAGgttaattttcattcactttttttatcatgtgttgctgttatttttcagggagcgatagttttgttaaatccaacaagatatatgtatcttaattttggtt...
species | Vitis vinifera |
transcript | Vv05s0049g01940.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AAAGCCTGCATCAGAGGTAGCAGAGGAGGTTTCAGGAGTAGAAGATGAAG GTGAAATAAAGTCTGTCTACGTGAGAAACTTGCCATCTACTGTATCTGCTTEST: gi|349827268|gb|FQ421541.1|FQ421541
genomic: AAAGCCTGCATCAGAGGTAGCAGAGGAGGTTTCAGGAGTAGAAGATGAAGgttaattttc ... atatcctcagGTGAAATAAAGTCTGTCTACGTGAGAAACTTGCCATCTACTGTATCTGCTT
EST: AAAGCCTGCATCAGAGGTAGCAAAAGAGGTTTCAGGAGTAGAAAATGAAG GTGAAATAAAAGTCTGTCTACGTGAGAAACTTGCCATCTACTGTATCTGCTEST: gi|110371206|gb|EC935042.1|EC935042
genomic: AAAGCCTGCATCAGAGGTAGCAGAGGAGGTTTCAGGAGTAGAAGATGAAGgttaattttc ... atatcctcagGTGAAATAAA-GTCTGTCTACGTGAGAAACTTGCCATCTACTGTATCTGCT
EST: AAAGCCTGCATCAGAGGTAGCAGAGGAGGTTTCAGGAGTAGAAGATGAAG GTGAAATAAAGTCTGTCTATGTGAGAAACTTGCCATCTACTGTATCTGCTT
genomic: AAAGCCTGCATCAGAGGTAGCAGAGGAGGTTTCAGGAGTAGAAGATGAAGgttaattttc ... atatcctcagGTGAAATAAAGTCTGTCTACGTGAGAAACTTGCCATCTACTGTATCTGCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGCCGCAGCCCAGTAATGAACAATCAGTTGCATCATCGGTTATGTTTGAAAAGCCTGCATCAGAGGTAGCAGAGGAGGTTTCAGGAGTAGAAGATGAAGgttaattttcattcactttttttatcatgtgttgctgttatttttcagggagcgatagttttgttaaatccaacaagatatatgtatcttaattttggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacaaga