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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTTAGCAAGTATGCCCAGACTGTGCCTGAGAAGTTGACGTTGGGAGAGCTCTGGAACATGACTGAGGGGAATCGGGCGGCCTTCGACTTCTTTGGCGGgtatgtttcagggcctgatgctcaattttaatattcagaattataactcgggtgctaattttttgttctttgagcgtggattgcag

Basic information

species Vitis vinifera
transcript Vv05s0049g01780.t01
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30305618|gb|CB982412.1|CB982412
EST:     CTCTGGAACATGACTGAGGGGAATCGGGCGGCCTTCGACTTCTTTGGCGG                         GATTGCAAGCAAGCTGGAGTGGGGACTTCTGTATGTTCTGGCAAGAGATGA
genomic: CTCTGGAACATGACTGAGGGGAATCGGGCGGCCTTCGACTTCTTTGGCGGgtatgtttca ... tggattgcagGATTGCAAGCAAGCTGGAGTGGGGACTTCTGTATGTTCTGGCAAGAGATGA
EST: gi|27581814|gb|CB004509.1|CB004509
EST:     CTCTGGAACATGACTGAGGGGAATCGGGCGGCCTTCGACTTCTTTGGCGG                         GATTGCAAGCAAGCTGGAGTGGGGACTTCTGTATGTTCTGGCAAGAGATGA
genomic: CTCTGGAACATGACTGAGGGGAATCGGGCGGCCTTCGACTTCTTTGGCGGgtatgtttca ... tggattgcagGATTGCAAGCAAGCTGGAGTGGGGACTTCTGTATGTTCTGGCAAGAGATGA
EST: gi|30305765|gb|CB982559.1|CB982559
EST:     CTCTGGAACATGACTGAGGGGAATCGGGCGGCCTTCGACTTCTTTGGCGG                         GATTGCAAGCAAGCTGGAGTGGGGACTTCTGTATGTTCTGGCAAGAGATGA
genomic: CTCTGGAACATGACTGAGGGGAATCGGGCGGCCTTCGACTTCTTTGGCGGgtatgtttca ... tggattgcagGATTGCAAGCAAGCTGGAGTGGGGACTTCTGTATGTTCTGGCAAGAGATGA
EST: gi|29783233|gb|CB349272.2|CB349272
EST:     CTCTGGAACATGACTGAGGGGAATCGGGCGGCCTTCGACTTCTTTGGCGG                         GATTGCAAGCAAGCTGGAGTGGGGACTTCTGTATGTTCTGGCAAGAGATGA
genomic: CTCTGGAACATGACTGAGGGGAATCGGGCGGCCTTCGACTTCTTTGGCGGgtatgtttca ... tggattgcagGATTGCAAGCAAGCTGGAGTGGGGACTTCTGTATGTTCTGGCAAGAGATGA
EST: gi|110400288|gb|EC966846.1|EC966846
EST:     CTCTGGAACATGACTGAGGGGAATCGGGCGGCCTTCGACTTCTTTGGCGG                         GATTGCAAGCAAGCTGGAGTGGGGACTTCTGTATGTTCTGGCAAGAGATGA
genomic: CTCTGGAACATGACTGAGGGGAATCGGGCGGCCTTCGACTTCTTTGGCGGgtatgtttca ... tggattgcagGATTGCAAGCAAGCTGGAGTGGGGACTTCTGTATGTTCTGGCAAGAGATGA
EST: gi|22008003|gb|BQ793037.1|BQ793037
EST:     CTTTGGAACATGACTGAGGGGAATCGGGCGGCCTTCGACTTCTTTGGCGG                         GATTGCAAGCAAGCTGGAGTGGGGACTTCTGTATGTTTTGGCAAGAGATGA
genomic: CTCTGGAACATGACTGAGGGGAATCGGGCGGCCTTCGACTTCTTTGGCGGgtatgtttca ... tggattgcagGATTGCAAGCAAGCTGGAGTGGGGACTTCTGTATGTTCTGGCAAGAGATGA
EST: gi|30135359|gb|CB920697.1|CB920697
EST:     CTCTGGAACATGACTGAGGGGAATCGGGCGGCCTTCGACTTCTTTGGCGG                         GATTGCAAGCAAGCTGGAGTGGGGACTTCTGTATGTTCTGGCAAGAGATGA
genomic: CTCTGGAACATGACTGAGGGGAATCGGGCGGCCTTCGACTTCTTTGGCGGgtatgtttca ... tggattgcagGATTGCAAGCAAGCTGGAGTGGGGACTTCTGTATGTTCTGGCAAGAGATGA
EST: gi|29782913|gb|CB348630.2|CB348630
EST:     CTCTGGAACATGACTGAGGGGAATCGGGCGGCCTTCGACTTCTTTGGCGG                         GATTGCAAGCAAGCTG-ATCTGGGGACTTCTGTATGTTCTGGCAAGAGATG
genomic: CTCTGGAACATGACTGAGGGGAATCGGGCGGCCTTCGACTTCTTTGGCGGgtatgtttca ... tggattgcagGATTGCAAGCAAGCTGGAG-TGGGGACTTCTGTATGTTCTGGCAAGAGATG
EST: gi|29783277|gb|CB349356.2|CB349356
EST:     CTCTGGAACATGACTGAGGGGAATCGGGCGGCCTTCGACTTCTTTGGCGG                         GATTGCAAGCAAGCTGGAGTGGGGACTTCTGTATGTTCTGGCAAGAGATGA
genomic: CTCTGGAACATGACTGAGGGGAATCGGGCGGCCTTCGACTTCTTTGGCGGgtatgtttca ... tggattgcagGATTGCAAGCAAGCTGGAGTGGGGACTTCTGTATGTTCTGGCAAGAGATGA