Sequence
atgc intronic sequence ATGC exonic sequenceGAAGAGGATGGGGGTTAGTGAGGAACAAAGTTCGGAAAGACTACCCTTCTGTACAATTGACTGCATGGAAGgtaaggaaatggggaccatctttggttggcacataaggaaatttatgagtggtgtgttaaactcacaatacaaagtgttgatgcctttgattgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0049g01420.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA20G34920.1 (Glycine max), 5'ss of exon 5
GAAGAGGATGGGGGTTAGTGAGGAACAAAGTTCGGAAAGACTACCCTTCTGTACAATTGACTGCATGGAAGgtaaggaaatggggaccatctttggttggcacataaggaaatttatg-agtggtgtgttaaactcacaatacaaagtgttgatgcctttga-ttgcag
||||| ||| | ||| | ||||||||| || || ||||||||||| ||||||||||||||||||||| || ||| | || ||||| | | | ||||| || | || || | | |||| | || ||| | ||||||
GAAGACCTTGGAGTACAGTCATAAACAAAGTTAAAAAGGATTACCCTTCTGTTCAATTGACTGCATGGAAGgtatggctatgagaacaatcttctgcagttt--------agcttatggagcaatttgaaaagttagttttttgaagttatattgttttttacttgcag
upper sequence: Vv05s0049g01420.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA10G32690.2 (Glycine max), 5'ss of exon 6
GAAGAGGATGGGGGTTAGTGAGGAACAAAGTTCGGAAAGACTACCCTTCTGTACAATTGACTGCATGGAAGgtaaggaaatggggaccatctttggttggcacataaggaaatttatgag-tggtgtgttaaactcacaatacaaagtgttgatgcctttga-ttgcag
||||| ||| | ||| | ||||||||| || || ||||||||||| || |||||||||||||||||| || |||| | || ||||| | | | || ||| | || || || | | |||| | || ||| | ||||||
GAAGACCTTGGAGTACAGTCATAAACAAAGTTAAAAAGGATTACCCTTCTGTTCAGTTGACTGCATGGAAGgtatggcaatgagaacaatcttctgcagttt--------agttcatgtgacagtttgaaaagttagttttttgaagttatattgttttttacttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|352785920|gb|FQ475923.1|FQ475923EST: AGAACAAAGTTCGAAAAGACTACCCTTCTGTACAATTGACTGCATGGAAG TTTTGGCCTATTGTTGGTTGGGTAAACTACCAGTATATGCCTCTACAGTTC
genomic: GGAACAAAGTTCGGAAAGACTACCCTTCTGTACAATTGACTGCATGGAAGgtaaggaaat ... ttgattgcagTTTTGGCCTATTGTTGGTTGGGTAAACTACCAGTATATGCCTCTACAGTTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAAGAGGATGGGGGTTAGTGAGGAACAAAGTTCGGAAAGACTACCCTTCTGTACAATTGACTGCATGGAAGgtaaggaaatggggaccatctttggttggcacataaggaaatttatgagtggtgtgttaaactcacaatacaaagtgttgatgcctttgattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG