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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGGAGAATAGCTCCTGGGGCAGAAAGCTGATTGTGCAGAAGAGGAGAGCATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAGgtttgttaagatgccatccctatatgtcgctgtactgcttgcatttaatttctccttcataccttttttcagccagaatatgcaacatgccttttaggtgtcagaccataacccatagaactgctcaagtctaatacattcattaatatgcatttgcag

Basic information

species Vitis vinifera
transcript Vv05s0049g01310.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0049g01310.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os02g40880.1 (Oryza sativa), 5'ss of exon 4
GTGGGAGAATAGCTCCTGGGGCAGAAAGCTGATTGTGCAGAAGAGGAGAGCATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAGgtttgttaagatgccatccctatatgtcgctgtactgcttgcatttaatttctccttcatacc--ttttttcagccagaatatgcaacatgccttttaggtgtcagaccataacccatagaactgctcaagtctaatacattcattaatatgcatttgcag
||||||||||||||| |||||||  ||||| ||||| |||||||||||||| || || ||||||||||| ||||||||| | |||||||| |||||||||||  |   | || | || |  |  ||      | ||| ||  |  || |  ||   | | |||  | ||||| |   ||| |                                                                               
GTGGGAGAATAGCTCATGGGGCAAGAAGCTAATTGTCCAGAAGAGGAGAGCGTCACTCAATGACTTTGACAGGTTCAAGGTTATGTTGGCCAAGATCAAGgtcag---acatcctattctcaattggtttactcctgtttataactactcactagcttacaccaatgttttctgtatgaacag------------------------------------------------------------------------------

upper sequence: Vv05s0049g01310.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os04g43540.1 (Oryza sativa), 5'ss of exon 4
GTGGGAGAATAGCTCCTGGGGCAGAAAGCTGATTGTGCAGAAGAGGAGAGCATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAGgtttgttaagatgccatccctatatgtcgctgtactgcttgcatttaatttctccttcataccttttttcagccagaatatgcaacatgccttttaggtgtcagaccataacccatagaactgctcaagtctaatacattcattaatatgcatttgcag
||||||||| ||||| ||||| |  || |||||||| ||||||||||||||||| || || |||||||| ||||||||| | |||||||| |||||||||||      | |  ||  | ||| |        || | | |  ||| ||  | |  |||||||    | | |  |      ||  | |||                                                                      
GTGGGAGAACAGCTCATGGGGTAAGAAACTGATTGTCCAGAAGAGGAGAGCATCCCTCAACGACTTTGACAGGTTCAAGGTTATGTTGGCGAAGATCAAGgt-----gatactccg-ctctacactctcgaatagtacctttattgaaggttttgttcatacaccctctaatactctgattggcatatgaacag-----------------------------------------------------------------

upper sequence: Vv05s0049g01310.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G028883_T01 (Zea mays), 5'ss of exon 4
GTGGGAGAATAGCTCCTGGGGCAGAAAGCTGATTGTGCAGAAGAGGAGAGCATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAGgtttgttaagatgccatccctatatgtcgctgtactgcttgcatttaatttctccttcataccttttttcagccagaatatgcaacatgccttttaggtgtcagaccataacccatagaactgctcaagtctaatacattcattaatatgcatttgcag
||||||||||||||| |||||||  ||||||||||| ||||||||||||||||| || ||||||||||| ||||||||| |||||||||| ||||||||||||||  |  || | |     ||   |   |  | || |      |  ||  | | | |||   |  |   |     || || ||||                                                                        
GTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTCAGAAGAGGAGAGCATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcat-attctagagtaattaatttatccattgttc-----tgcttatttcctaatatactggtatggttgtcatttg-aacag-----------------------------------------------------------------------

upper sequence: Vv05s0049g01310.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G140116_T01 (Zea mays), 5'ss of exon 4
GTGGGAGAATAGCTCCTGGGGCAGAAAGCTGATTGTGCAGAAGAGGAGAGCATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAGgtttgttaagatgccatccctatatgtcgctg-tactgcttgcattta-atttctccttcataccttttttcagccagaatatgcaacatgccttttaggtgtcagaccataacccatagaactgctcaagtctaatacattcattaatatgcatttgcag
||||||||| ||||| |||||||  ||||||||||| ||||||||||||||||| || ||||||||||||||||||||  ||||| |||| ||||| |||||  |  ||  | ||   |  || | | | |  |  ||   |  | || ||| ||   ||| || || |||   |    || || ||||                                                                        
GTGGGAGAACAGCTCATGGGGCAAGAAGCTGATTGTCCAGAAGAGGAGAGCATCGCTCAATGACTTTGATAGGTTCAAAGTCATGCTGGCGAAGATTAAGgtcagg-aaccttcctgtcaaatgtctagttcctgttgacagtgtctatattgctggctcacactttcttttt-cttttatgtg-aacag-----------------------------------------------------------------------

upper sequence: Vv05s0049g01310.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G163104_T01 (Zea mays), 5'ss of exon 2
-GTGGGAGAATAGCTCCTGGGGCAGAAAGCTGATTGTGCAGAAGAGGAGAGCATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAGgtttgttaagatgccatccctatatgtcgctg-tactgcttgcattta-atttctccttcataccttttttcagccagaatatgcaacatgccttttaggtgtcagaccataacccatagaactgctcaagtctaatacattcattaatatgcatttgcag
 |||||||||  |||| ||||||| || ||||||| |  |||||||||||||| | || ||| ||||||||||||||||  ||||| ||||||||||||||||  |  ||  | |||  |  || | |   |  |  ||      | || |||  |  |||| || |||| |       || |                                                                               
AGTGGGAGAACGGCTCATGGGGCATAA-GCTGATTTTCTAGAAGAGGAGAGCAGCGCTCAATAACTTTGATAGGTTCAAAGTCATGCTGGCAAAGATCAAGgtcagg-aacctcccaatcaaatgtttaattcctgttggcactgtctatattgtttgttcacactttttctttatgtaaacag------------------------------------------------------------------------------

upper sequence: Vv05s0049g01310.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G168330_T02 (Zea mays), 5'ss of exon 4
GTGGGAGAATAGCTCCTGGGGCAGAAAGCTGATTGTGCAGAAGAGGAGAGCATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAGgtttgttaagatgccatccctatatgtcgctgtactgcttgcattta----atttctccttcataccttttttcagccagaatatgcaacatgccttttaggtgtcagaccataacccatagaactgctcaagtctaatacattcattaatatgcatttgcag
|||||| || ||||| |||||||  ||||||||||| ||||||||||| ||  | || | ||||||||| ||||||||| ||||| |||||| |||||||||  |     |   |      | |||||    | ||| | ||| | |    ||| ||   ||| |||||||| |        ||  ||                                                                           
GTGGGAAAACAGCTCATGGGGCAAGAAGCTGATTGTCCAGAAGAGGAGGGCTGCGCTCAGTGACTTTGACAGGTTCAAGGTCATGCTGGCAAGGATCAAGgtcag---gaacctccctgtcaaatgtctagttcctgttggcactgagtatattgcttgctcacacctttttcc--tttatgtaaacag--------------------------------------------------------------------------

upper sequence: Vv05s0049g01310.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT4G27090.1 (Arabidopsis thaliana), 5'ss of exon 4
GTGGGAGAATAGCTCCTGGGGCAGAAAGCTGATTGTGCAGAAGAGGAGAGCATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAGgtttgttaagatgccatccctatatgtcgctgtactgcttgcatttaatttctccttcataccttttttcagccagaatatgcaacatgccttttaggtgtcagaccataacccatagaactgctcaagtctaatacattcattaatatgcatttgcag
||||||||| ||||| ||||| || ||||| || ||||||||  | || ||    ||||| ||||||||||||||||||||||||||||| |||||||||||  ||     |   ||   || ||||   || | | ||    |   | |  || |||||  |       | |   ||| |  ||   |  |||| | |||  |                                                       
GTGGGAGAAAAGCTCATGGGGTAGGAAGCTTATCGTGCAGAAACGTAGGGCTAACCTTAACGACTTTGATAGGTTCAAGATCATGTTGGCCAAGATCAAGgtcagt--gtgttaaattgttagatgtt--tgaaattctgtggt---agtgttcattcatgtcag-----aactgaaatgt-taatgggtttttttgctgtttgcag----------------------------------------------------

upper sequence: Vv05s0049g01310.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT2G20450.1 (Arabidopsis thaliana), 5'ss of exon 4
GTGGGAGAATAGCTCCTGGGGCAGAAAGCTGATTGTGCAGAAGAGGAGAGCATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAGgtttgttaagatgccatccctatatgtcgctgtactgcttgcatttaatttctccttcataccttttttcagccagaatatgcaacatgccttttaggtgtcagaccataacccatagaactgctcaagtctaatacattcattaatatgcatttgcag
||||||||| || || ||||| || || || |||||||||||||| |||||  | || ||||| ||||| |||||||||||||||||||| || ||||||||| ||| |     | ||  | |||    |  |  || ||  | | || | || |||  | |   |   |||   || | | ||      | ||| |   |||                                                        
GTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGCAGAAGAGAAGAGCTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTTGGCCAAAATCAAGgttggttta-----cttctttgtatccaccaatgttgttt-tagtcaact-ctactttgtgcaaatg--cagat-gagttttcactgcttcattt-gccctcactttcggt------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27581928|gb|CB004623.1|CB004623
EST:     CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAG                         AGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
genomic: CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAGgtttgttaag ... gcatttgcagAGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
EST: gi|110690588|gb|EE067820.1|EE067820
EST:     CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAG                         AGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
genomic: CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAGgtttgttaag ... gcatttgcagAGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
EST: gi|110691773|gb|EE070259.1|EE070259
EST:     CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAG                         AGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
genomic: CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAGgtttgttaag ... gcatttgcagAGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
EST: gi|110693797|gb|EE070342.1|EE070342
EST:     CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAG                         AGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
genomic: CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAGgtttgttaag ... gcatttgcagAGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
EST: gi|110397687|gb|EC963510.1|EC963510
EST:     CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAG                         AGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
genomic: CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAGgtttgttaag ... gcatttgcagAGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
EST: gi|110724784|gb|EE100916.1|EE100916
EST:     CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAG                         AGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
genomic: CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAGgtttgttaag ... gcatttgcagAGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
EST: gi|71879325|gb|DT028380.1|DT028380
EST:     CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAG                         AGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
genomic: CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAGgtttgttaag ... gcatttgcagAGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
EST: gi|77588138|gb|DV223280.1|DV223280
EST:     CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAG                         AGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
genomic: CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAGgtttgttaag ... gcatttgcagAGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
EST: gi|110385712|gb|EC950261.1|EC950261
EST:     CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAG                         AGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
genomic: CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAGgtttgttaag ... gcatttgcagAGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
EST: gi|71883824|gb|DT032879.1|DT032879
EST:     CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAG                         AGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
genomic: CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAGgtttgttaag ... gcatttgcagAGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
EST: gi|110375750|gb|EC940763.1|EC940763
EST:     CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAG                         AGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
genomic: CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAGgtttgttaag ... gcatttgcagAGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
EST: gi|30296294|gb|CB973088.1|CB973088
EST:     CATCTCTTAATGACTTTGATAGGCTCAAGATCATGTTGGCAAAGATCAAG                         AGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
genomic: CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAGgtttgttaag ... gcatttgcagAGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
EST: gi|77580220|gb|DV219008.1|DV219008
EST:     CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAG                         AGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
genomic: CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAGgtttgttaag ... gcatttgcagAGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
EST: gi|110689055|gb|EE064943.1|EE064943
EST:     CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAG                         AGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
genomic: CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAGgtttgttaag ... gcatttgcagAGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
EST: gi|34320490|gb|CF373244.1|CF373244
EST:     CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAG                         AGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
genomic: CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAGgtttgttaag ... gcatttgcagAGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
EST: gi|110414454|gb|EC980286.1|EC980286
EST:     CCTCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAG                         AGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
genomic: CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAGgtttgttaag ... gcatttgcagAGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
EST: gi|110379010|gb|EC944177.1|EC944177
EST:     CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAG                         AGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
genomic: CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAGgtttgttaag ... gcatttgcagAGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
EST: gi|34416610|gb|CF415364.1|CF415364
EST:     CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAG                         AGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
genomic: CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAGgtttgttaag ... gcatttgcagAGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
EST: gi|110417800|gb|EC983883.1|EC983883
EST:     CCTCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAG                         AGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
genomic: CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAGgtttgttaag ... gcatttgcagAGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
EST: gi|110695806|gb|EE074247.1|EE074247
EST:     CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAG                         AGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
genomic: CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAGgtttgttaag ... gcatttgcagAGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
EST: gi|110708991|gb|EE084059.1|EE084059
EST:     CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAG                         AGGGGTGGAGTGATCANGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
genomic: CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAGgtttgttaag ... gcatttgcagAGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
EST: gi|27584222|gb|CB006917.1|CB006917
EST:     CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAG                         AGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
genomic: CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAGgtttgttaag ... gcatttgcagAGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
EST: gi|71868255|gb|DT017310.1|DT017310
EST:     CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAG                         AGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
genomic: CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAGgtttgttaag ... gcatttgcagAGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
EST: gi|110731703|gb|EE106347.1|EE106347
EST:     CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAG                         AGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
genomic: CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAGgtttgttaag ... gcatttgcagAGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
EST: gi|110705265|gb|EE081950.1|EE081950
EST:     CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAG                         AGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA
genomic: CATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAGgtttgttaag ... gcatttgcagAGGGGTGGAGTGATCAGGCAAGAGCTTGCAAAGCTGAAAAAACAGACTGCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGGGAGAATAGCTCCTGGGGCAGAAAGCTGATTGTGCAGAAGAGGAGAGCATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAGgtttgttaagatgccatccctatatgtcgctgtactgcttgcatttaatttctccttcataccttttttcagccagaatatgcaacatgccttttaggtgtcagaccataacccatagaactgctcaagtctaatacattcattaatatgcatttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA