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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACACAGAGATCATAGAGCAAATTGACCGAGATGTCAAGCGCACTCATCCAGACATGAACTTCTTCTCTGGGGACACGCCATCTGCAAAAACAAATCAGgtatgtgttgttacttgaggcatgagacttgatacaaacatcacccatttgaccaaattaaatggatcctgtatttcag

Basic information

species Vitis vinifera
transcript Vv05s0029g01350.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0029g01350.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os01g68010.3 (Oryza sativa), 5'ss of exon 5
GACACAGAGATCATAGAGCAAATTGACCGAGATGTCAAGCGCACTCATCCAGACATGAACTTCTTCTCTGGGGACACGCCATCTGCAAAAACAAATCAGgtatgtgttgttacttgaggcatgagacttgatacaaacatcacccatttgaccaaattaaatggatcctgtatttcag
 |  ||||||| || |||||||||||||| ||||| ||||||||||| || |||||| | || |||| ||| ||| |  | | ||||||  | ||||||||         ||  | || |   | ||    | |     |||   |  ||||  |     || | || |   |  |||
TATTCAGAGATTATCGAGCAAATTGACCGTGATGTGAAGCGCACTCACCCTGACATGCATTTTTTCTGTGGAGACTCATCTTTTGCAAAGTCCAATCAGgtgaactccactatctaagtct--aaacagagttctgc--tcagaaacctgactgatc---ataggtcatccttaccag

upper sequence: Vv05s0029g01350.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA11G36520.1 (Glycine max), 5'ss of exon 5
GACACAGAGATCATAGAGCAAATTGACCGAGATGTCAAGCGCACTCATCCAGACATGAACTTCTTCTCTGGGGACACGCCATCTGCAAAAACAAATCAGgtatgtgttgttacttgaggcatga-----gacttgatacaaacatcacccatttgaccaaattaaatggatcctgtatttcag----------
|||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||  ||||||||||||| ||  | |  | ||||||| | ||||||||   |  | |   ||      | |      | || |||| |||   | || |||        |       | |    |||| |          
GACACAGAGATCATAGAGCAGATTGACCGAGATGTCAAGCGTACTCATCCAGATATAGACTTCTTCTCTGGTGATTCTCATTTTGCAAAATCTAATCAGgttcttcctctattttttaattttattttcaaattcataccaactcaatcctttttcttgccattttgactttcaacttttccggatttttcag

upper sequence: Vv05s0029g01350.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA08G11760.1 (Glycine max), 5'ss of exon 5
GACACAGAGATCATAGAGCAAATTGACCGAGATGTCAAGCGCACTCATCCAGACATGAACTTCTTCTCTGGGGACACGCCATCTGCAAAAACAAATCAGgtatgtgttgttacttgaggcatgagacttgatacaaacatca--cccatttgaccaaattaaatggatcctgtatt--tcag--------------------------
|| |||||||||||||| ||||||||||||||||| |||||||||||||| || ||| |||| |||||||| ||  | | || ||||||| | |||||||| | |  | ||| |||   | ||| | || ||||||||  ||    ||  |       || | || | |||  |||  | |                           
GATACAGAGATCATAGATCAAATTGACCGAGATGTAAAGCGCACTCATCCTGATATGCACTTTTTCTCTGGTGATTCCCAATTTGCAAAATCTAATCAGgtttttcct-ttatttgt--cttgaaattt-atacaaactccaagttcaagtctttttcttgagtgaacccttgattaattattactatttttcgggggggattttcag

upper sequence: Vv05s0029g01350.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA18G00430.2 (Glycine max), 5'ss of exon 5
GACACAGAGATCATAGAGCAAATTGACCGAGATGTCAAGCGCACTCATCCAGACATGAACTTCTTCTCTGGGGACACGCCATCTGCAAAAACAAATCAGgtatgtgt--tgttacttgaggcatgagacttgatacaaacatcacccatttgaccaaattaaatggatcctgtatttcag----------
||||||||||||||||| || ||||||||||||||||| || ||||||||||| ||  ||||||||||||| ||  | |  | ||||||| | ||||||||   |    | ||  ||      |  || || || | |||     || |||        |       | |    |||| |          
GACACAGAGATCATAGACCAGATTGACCGAGATGTCAATCGTACTCATCCAGATATACACTTCTTCTCTGGTGATTCTCTTTTTGCAAAATCTAATCAGgttcttcctctatttatttttattttcgaattcatgccaactcggtcctttttcttgccattttgactttcaacttttccggattttgcag

upper sequence: Vv05s0029g01350.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA05G28660.1 (Glycine max), 5'ss of exon 5
GACACAGAGATCATAGAGCAAATTGACCGAGATGTCAAGCGCACTCATCCAGACATGAACTTCTTCTCTGGGGACACGCCATCTGCAAAAACAAATCAGgtatgtgttgttacttgaggcatg---agactt--gatacaaacatcacccatt-tgaccaaattaa---atggatcctgtatttcag----------------
|| ||||||||||| || ||||||||||||||||| |||||||||||||| || ||| |||| |||||||| ||  | | || ||||||| | ||||||||   |  | |  |||||         | |||    || |||   |   |     ||| |   || |   ||   | || | ||||                  
GATACAGAGATCATCGACCAAATTGACCGAGATGTAAAGCGCACTCATCCTGATATGCACTTTTTCTCTGGTGATTCCCAATTTGCAAAATCTAATCAGgtcctttatttgtcttgaaattcatccaaactccaaattcaagtcttttctgccatgaaccctttgatttattattactatttttcgcgggggggcattttcag

upper sequence: Vv05s0029g01350.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT1G04830.2 (Arabidopsis thaliana), 5'ss of exon 5
GACACAGAGATCATAGAGCAAATTGACCGAGATGTCAAGCGCACTCATCCAGACATGAACTTCTTCTCTGGGGACACGCCATCTGCAAAAACAAATCAGgta-tgtgttgttacttgaggcatgagacttgatacaaacatcacccatttgaccaaattaaatgg-atcctgtatttcag------
|| || |||| |||||| ||||| ||| ||||||||||||| || |||||||||||   ||| ||||| || ||  |  | | |||     | |||||||||   | ||  |  |     ||  | | ||    ||   ||     |||   | ||  | | ||  ||   |  || ||       
GATACGGAGACCATAGAACAAATAGACAGAGATGTCAAGCGTACACATCCAGACATACCCTTTTTCTCCGGTGAATCATCGTTTGCGCGTTCTAATCAGgtaacctttttgtgttctcatcagcaaatttt---cacctatttttgattaatcaaagctcagtgacatttcgatttacatgtctag