Sequence
atgc intronic sequence ATGC exonic sequenceGGGACTTTATGATGGATTTGATGTCAAGCTCGAGAAAGTTTTGAGGGCTCGTGCTAGACGTAGGGTCAATTGCCATGGGCGTTACATGCCAAGGATGGCGgtacgaagactatcttttacattttatctatccatgcattatgaggatttgagattgaatgcatgttaatgtctacttgacctgagaacgcatttccattctaccgtcttcactaaccttaaagaagaatcacttactaaaggtcacaagaattttgtttaattgaatcaaaaattaccattaaaaatattttgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0029g01140.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os01g69030.1 (Oryza sativa), 5'ss of exon 5
GGGACTTTATGATGGATTTGATGTCAAGCTCGAGAAAGTTTTGAGGGCTCGTGCTAGACGTAGGGTCAATTGCCATGGGCGTTACATGCCAAGGATGGCGgtacgaagactatcttttacattttatctatccatgcattatgaggatttgagattgaatgcatgttaatgtctacttgacctg-agaacgcatttccattctaccgtcttcactaaccttaaagaagaatcacttactaaaggtcacaagaattttgtttaattgaatcaaaaattaccattaaaaatattttgcag
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GGGACTGTATGATGGCTTTGATGTCAAGCTAGAGAAAGTTTTGAGGGCTCGTGCGAGGCGCGGAGTTAGCTGCCACGGCCGTTTTATGCCTAGAATGGTGgtaagtgttcaataataagcgtaatagtactgtatcatatctgacaaatttccacagatcttgtgtttgacttga---aacttgtggtaatcaattttgttttgtatgtgtgatttatgtttttggt-aattattatgcacactcctccacag---------------------------------------------
upper sequence: Vv05s0029g01140.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G140107_T01 (Zea mays), 5'ss of exon 5
GGGACTTTATGATGGATTTGATGTCAAGCTCGAGAAAGTTTTGAGGGCTCGTGCTAGACGTAGGGTCAATTGCCATGGGCGTTACATGCCAAGGATGGCGgtacgaagactatcttttacattttatctatccatgcattatgaggatttgagattgaatgcatgttaatgtctacttgacctgagaacgcatttccattctaccgtcttcactaaccttaaagaagaatcacttactaaaggtcacaagaattttgtttaattgaatcaaaaattaccattaaaaatattttgcag
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GGGATTGTACGACGGATTTGATGTCAAGCTTGAGAAAGTGTTGAGGGCACGGGCGAGGCGTGGGGTTAGCTGCCATGGTCGTTTCATGCCTAGGATGGTGgtaagta--------tttaaacctctcttgtccataccaagtagtaaatgctgttttactgtgt-tgattagagaactttgttgacag-------------------------------------------------------------------------------------------------------------
upper sequence: Vv05s0029g01140.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM5G875238_T01 (Zea mays), 5'ss of exon 4
GGGACTTTATGATGGATTTGATGTCAAGCTCGAGAAAGTTTTGAGGGCTCGTGCTAGACGTAGGGTCAATTGCCATGGGCGTTACATGCCAAGGATGGCGgtacgaagactatcttttacattttatctat-ccatgcattatgaggatttgagattgaatgcatgttaatgtctacttgacctgagaacgcatttccattctaccgtcttcactaaccttaaagaagaatcacttactaaaggtcacaagaattttgtttaattgaatcaaaaattaccattaaaaatattttgcag
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GGGATTGTACGATGGATTTGATGTCAAGCTTGAGAAAGTGCTGAGGGCACGGGCGAGGCGCGGGGTTAGCTGCCATGGTCGTTACATGCCTAGGATGGTGgtaagtataaaaatctctg----ttatccatgccaagtagtaagtgctgttcaacataaata---attaaaatcca-ttaatccatatatgtattgattagagaactttgttggcag---------------------------------------------------------------------------------
upper sequence: Vv05s0029g01140.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA08G42140.1 (Glycine max), 5'ss of exon 4
GGGACTTTATGATGGATTTGATGTCAAGCTCGAGAAAGTTTTGAGGGCTCGTGCTAGACGTAGGGTCAATTGCCATGGGCGTTACATGCCAAGGATGGCGgtacgaagactatcttttacattttatctatccatgcattatgaggatttgagattgaatgcatgttaatgtctacttgacctgagaacgcatttccattctaccgtcttcactaaccttaaagaagaatcacttactaaaggtcacaagaattttgtttaattgaatcaaaaattaccattaaaaatattttgcag
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GGGACTTTATGATGGATTTGATGTCAAGCTTGAGAAAGTATTGCGTGCTCGTGCTAGGCGTGGTGTCAACTGTCATGGTCGGTACATGCCAAGGATGGCGgtaata----tgttaactgattttgaaaatttgaaggagagtgaatgtttaa-attgaa-----gttacaat--attttagct----acacaactccactgcataaaattctctgc---------------------------------------------------------------------------------
upper sequence: Vv05s0029g01140.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA14G03300.1 (Glycine max), 5'ss of exon 4
GGGACTTTATGATGGATTTGATGTCAAGCTCGAGAAAGTTTTGAGGGCTCGTGCTAGACGTAGGGTCAATTGCCATGGGCGTTACATGCCAAGGATGGCGgtacgaagactatctt--ttacattttatctatccatgcattatgaggatttgagattgaatgcatgttaatgtctacttgacctgagaacgcatttccattctaccgtcttcactaaccttaaagaagaatcacttactaaaggtcacaagaattttgtttaattgaatcaaaaattaccattaaaaatattttgcag
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GGGACTTTATGATGGGTTTGATGTCAAGCTTGAGAAAGTTTTGCGTGCTCGAGTTAGACGTGGTGTCAATTGTCATGGCCGATTCATGCCAAGGATGGCGgtaagaatgcaactaggatcacacactcagactcaatgttcgaaagtcttttatttcttaaaccttggtgaaacttctttggaaaaggaa-acaactatgt--------------------------------------------------------------------------------------------------
upper sequence: Vv05s0029g01140.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA18G12890.1 (Glycine max), 5'ss of exon 4
GGGACTTTATGATGGATTTGATGTCAAGCTCGAGAAAGTTTTGAGGGCTCGTGCTAGACGTAGGGTCAATTGCCATGGGCGTTACATGCCAAGGATGGCGgtacgaagactatcttttacattttatctatccatgcattatgaggatttgagattgaatgcatgttaatgtctacttgacctgagaacgcatttccattctaccgtcttcactaaccttaaagaagaatcacttactaaaggtcacaagaattttgtttaattgaatcaaaaattaccattaaaaatattttgcag
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GGGGCTTTATGATGGATTTGATGTCAAGCTTGAGAAAGTATTGCGTGCTCGTGCTAGGCGTGGTGTCAACTGTCATGGTCGATACATGCCAAGGATGGCGgtaatatgttaattgatgtcacattaaaatttgaaggagagtgaatgtttaa-attgaagttataatatt------ttagctacacaactccactgcataaaactct------------------------------------------------------------------------------------------
upper sequence: Vv05s0029g01140.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT1G04920.1 (Arabidopsis thaliana), 5'ss of exon 4
GGGACTTTATGATGGATTTGATGTCAAGCTCGAGAAAGTTTTGAGGGCTCGTGCTAGACGTAGGGTCAATTGCCATGGGCGTTACATGCCAAGGATGGCGgtacgaagactatcttttacattttatctatccatgcattatgaggatttgagattgaatgcatgttaatgtctacttgacctgagaacgcatttccattctaccgtcttcactaaccttaaagaagaatcacttactaaaggtcacaagaattttgtttaattgaatcaaaaattaccattaaaaatattttgcag
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GGGACTTTATGATGGGTTCGATGTAAAACTCGAGAAAGTCTTGAGAGCTCGTGCTAGACGCGGTGTTAATTGCCACGGAAGGTTCATGCCAAGAATGGCGgtaagtacacagataacta-gccaggttggaaaagttataattatgaagtaagattgagtgagttagtgagtctg-ttgtccag-----------------------------------------------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|294967127|gb|GW840002.1|GW840002EST: GTGCTAGACGTAGGGTCAATTGCCATGGGCGTTACATGCCAAGGATGGCG GTTATTCCTCCTGGGATGGACTTTAGCAGTGTTGAGGTTCAGGAGGATGCC
genomic: GTGCTAGACGTAGGGTCAATTGCCATGGGCGTTACATGCCAAGGATGGCGgtacgaagac ... tattttgcagGTTATTCCTCCTGGGATGGACTTTAGCAGTGTTGAGGTTCAGGAGGATGCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGGACTTTATGATGGATTTGATGTCAAGCTCGAGAAAGTTTTGAGGGCTCGTGCTAGACGTAGGGTCAATTGCCATGGGCGTTACATGCCAAGGATGGCGgtacgaagactatcttttacattttatctatccatgcattatgaggatttgagattgaatgcatgttaatgtctacttgacctgagaacgcatttccattctaccgtcttcactaaccttaaagaagaatcacttactaaaggtcacaagaattttgtttaattgaatcaaaaattaccattaaaaatattttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG