1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CCTGCATGATCCTTCTAAAGATACAGGGTTTGTAGGTTGTGCCTTAACAAGCAACATGGTGCGATTTTTCAAGACCCCAGATGGGTCATGGAGCCACGAGgtatgcggataatatgtgtttcttcaattcctttgtttgaaaccttgcattttgaattgtattagtctctattaaggcatgacaatccacaatatataatcactccctaatttacttatgaag
species | Vitis vinifera |
transcript | Vv05s0029g00240.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GCAATATGGTGCGATTTTTCAAGACCCCAGATGGGTCATGGAGCCACGAG GTTGCAGCATCAGTAAAACCACTGAAGGTGCAAAACTGGATTCTTCCTGAAEST: gi|110378930|gb|EC944090.1|EC944090
genomic: GCAACATGGTGCGATTTTTCAAGACCCCAGATGGGTCATGGAGCCACGAGgtatgcggat ... acttatgaagGTTGCAATATCAGTAAAACCACTGAAGGTGCAAAACTGGATTCTTCCTGAC
EST: GCAACATGGTGCGATTTTTCAAGACCCCAGATGGGTCATGGAGCCACGAG GTTGCAATATCAGTAAAACCACTGAAGGTGCAAAACTGGATTCTTCCTGACEST: gi|33401496|gb|CF207123.1|CF207123
genomic: GCAACATGGTGCGATTTTTCAAGACCCCAGATGGGTCATGGAGCCACGAGgtatgcggat ... acttatgaagGTTGCAATATCAGTAAAACCACTGAAGGTGCAAAACTGGATTCTTCCTGAC
EST: GCAACATGGTGCGATTTTTCAAGACCCCAGATGGGTCATGGAGCCACGAG GTTGCAATATCAGTAAAACCACTGAAGGTGCAAAACTGGATTCTTCCTGAC
genomic: GCAACATGGTGCGATTTTTCAAGACCCCAGATGGGTCATGGAGCCACGAGgtatgcggat ... acttatgaagGTTGCAATATCAGTAAAACCACTGAAGGTGCAAAACTGGATTCTTCCTGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTGCATGATCCTTCTAAAGATACAGGGTTTGTAGGTTGTGCCTTAACAAGCAACATGGTGCGATTTTTCAAGACCCCAGATGGGTCATGGAGCCACGAGgtatgcggataatatgtgtttcttcaattcctttgtttgaaaccttgcattttgaattgtattagtctctattaaggcatgacaatccacaatatataatcactccctaatttacttatgaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA