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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCATATCGAGCCTTGTATATTTTAAATTGGATTTACCGCTACTTTACGGAGCCACACTATGTCCATTGGATCAgtatgactctctctctctctctctctctctctctctcatatgcatatgtatgcacaggcatgcacatattcatgtctttaatcatgcatgtcaacacctcatttatgcaataattctacttttgcag

Basic information

species Vitis vinifera
transcript Vv05s0029g00180.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0029g00180.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os04g30800.2 (Oryza sativa), 5'ss of exon 4
TGCATATCGAGCCTTGTATATTTTAAATTGGATTTACCGCTACTTTACGGAGCCACACTATGTCCATTGGATCAgtatgactctctctctctctctctctctctctctctcatatgcatatgtatgcacaggcatgcacatattcatgtctttaatcatgcatgtcaa-cacctcatttatgcaataattctacttttgcag
 ||||| ||||| || || ||  | || |||   ||||||||||| || |||||||||||||| |||||||| |||||| |  | |||   |  |  | | ||| | | | || |  |||| ||||||  || | ||| || | ||    ||||    ||  | | || ||                               
CGCATACCGAGCATTATACATCCTCAACTGGGCCTACCGCTACTTCACTGAGCCACACTATGTGCATTGGATAAgtatgtca-tatctagattgcgttat-tctgtatttaattta-atatatatgcattggga-gca-atctacaacaatttatgtgtgtttcttaaacag------------------------------

upper sequence: Vv05s0029g00180.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA18G35390.1 (Glycine max), 5'ss of exon 4
TGCATATCGAGCCTTGTATATTTTAAATTGGATTTACCGCTACTTTACGGAGCCACACTATGTCCATTGGATCAgtatgactctctctctctctctctctctctctctctcatatgcatatgtatgcacaggcatgcacatattcatgtctttaatcatgcatgtcaacacctcatttatgcaataattctacttttgcag
 |||||  ||||  | || ||| | || ||||| |||||||||||||| ||||| |||| |||||||||||| ||||||| | |||||   ||| | |     |  || |  | |     | ||  |  |       |  |||| |   || |   |||   |  | |   ||  |                         
-GCATACAGAGCACTATACATTCTCAACTGGATCTACCGCTACTTTACCGAGCCTCACTTTGTCCATTGGATAAGtatgattttctcttattctgtttaatggttactattttttttgcttctacacttaaa---ataattattaactactctctgcattgttaactatgtcttgtgg-----------------------

upper sequence: Vv05s0029g00180.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA08G46570.1 (Glycine max), 5'ss of exon 4
TGCATATCGAGCCTTGTATATTTTAAATTGGATTTACCGCTACTTTACGGAGCCACACTATGTCCATTGGATCAgtatgactctctctctctctctctctctctctctctcatatgcatatgtatgcacaggcatgcacatattcatgtctttaatcatgcatgtcaacacctcatttatgcaataattctacttttgcag
||||||  |||   | || ||| | || ||||| || ||||||||||| ||||| |||| |||||||||||| ||||||| |||||||   | | | |     |  || |  | |     | || ||  |    |  |  |||| |     |  |   ||||| |   |||  |   ||||                    
TGCATACAGAGGACTATACATTCTCAACTGGATCTATCGCTACTTTACTGAGCCCCACTTTGTCCATTGGATAAgtatgattctctcttattgtgttttatggttactattttttttgcttctacgcttat---tataattattaagtaactacactctgcat-tattcactac---tatg--------------------