Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAAGACTGCATGAACAGCTGGAGgttagtttctttgattggccaaatgcagcccaggctgtaggtctgtgtttagaagtggcctgtgcatttttgggctaacattagacactttgaacgattc...

Basic information

species Vitis vinifera
transcript Vv05s0029g00060.t01
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110359959|gb|EC922358.1|EC922358
EST:     CTTTGCGTGTTCAAATGGAAGTTCAAAGAAGACTGCATGAACAGCTGGAG                         GTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAG
genomic: CTTTGCGTGTTCAAATGGAAGTTCAAAGAAGACTGCATGAACAGCTGGAGgttagtttct ... atttaagcagGTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAG
EST: gi|77578980|gb|DV218321.1|DV218321
EST:     CTTTGCGTGTTCAAATGGAAGTTCAAAGAAGACTGCATGAACAGCTGGAG                         GTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAG
genomic: CTTTGCGTGTTCAAATGGAAGTTCAAAGAAGACTGCATGAACAGCTGGAGgttagtttct ... atttaagcagGTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAG
EST: gi|349807865|gb|FQ402256.1|FQ402256
EST:     CTTTGCGTGTTCAAATGGAAGTTCAAAGAAGATTGCATGAACAGCTTGAG                         GTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAG
genomic: CTTTGCGTGTTCAAATGGAAGTTCAAAGAAGACTGCATGAACAGCTGGAGgttagtttct ... atttaagcagGTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAG
EST: gi|352763452|gb|FQ473155.1|FQ473155
EST:     CTTTGCGTGTTCAAATGGAAGTTCAAAGAAGACTGCATGAACAGCTGGAG                         GTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAG
genomic: CTTTGCGTGTTCAAATGGAAGTTCAAAGAAGACTGCATGAACAGCTGGAGgttagtttct ... atttaagcagGTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAG
EST: gi|71873838|gb|DT022893.1|DT022893
EST:     CTTTGCGTGTTCAAATGGAAGTTCAAAGAAGACTGCATGAACAGCTGGAG                         GTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAG
genomic: CTTTGCGTGTTCAAATGGAAGTTCAAAGAAGACTGCATGAACAGCTGGAGgttagtttct ... atttaagcagGTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAG
EST: gi|110372532|gb|EC936708.1|EC936708
EST:     CTTTGCGTGTTCAAATGGAAGTTCAAAGAAGACTGCATGAACAGCTGGAG                         GTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAG
genomic: CTTTGCGTGTTCAAATGGAAGTTCAAAGAAGACTGCATGAACAGCTGGAGgttagtttct ... atttaagcagGTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAG
EST: gi|71871639|gb|DT020694.1|DT020694
EST:     CTTTGCGTGTTCAAATGGAAGTTCAAAGAAGACTGCATGAACAGCTGGAG                         GTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAG
genomic: CTTTGCGTGTTCAAATGGAAGTTCAAAGAAGACTGCATGAACAGCTGGAGgttagtttct ... atttaagcagGTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAG
EST: gi|352786484|gb|FQ479093.1|FQ479093
EST:     CTTTGCGTGTTCAAATGGAAGTTCAAAGAAGATTGCATGAACAGCTTGAG                         GTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAGGGCAAATACCTGCAG
genomic: CTTTGCGTGTTCAAATGGAAGTTCAAAGAAGACTGCATGAACAGCTGGAGgttagtttct ... atttaagcagGTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAG
EST: gi|71890799|gb|DT039854.1|DT039854
EST:     CTTTGCGTGTTCAAATGGAAGTTCAAAGAAGACTGCATGAACAGCTGGAG                         GTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAG
genomic: CTTTGCGTGTTCAAATGGAAGTTCAAAGAAGACTGCATGAACAGCTGGAGgttagtttct ... atttaagcagGTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAG
EST: gi|110381320|gb|EC946647.1|EC946647
EST:     CTTTGCGTGTTCAAATGGAAGTTCAAAGAAGACTGCATGAACAGCTGGAG                         GTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAG
genomic: CTTTGCGTGTTCAAATGGAAGTTCAAAGAAGACTGCATGAACAGCTGGAGgttagtttct ... atttaagcagGTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAG
EST: gi|30125976|gb|CB911315.1|CB911315
EST:     CTTTGCGTGTTCAAATGGAAGTTCAAAGAAGATTGCATGAACAGCTTGAG                         GTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAG
genomic: CTTTGCGTGTTCAAATGGAAGTTCAAAGAAGACTGCATGAACAGCTGGAGgttagtttct ... atttaagcagGTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAG
EST: gi|37190451|gb|CF609800.1|CF609800
EST:     GCGTGTTCAAATGGAAGTTCAAAGAAGACTGCATGAACAGCTGGAG                         GTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAG
genomic: GCGTGTTCAAATGGAAGTTCAAAGAAGACTGCATGAACAGCTGGAGgttagtttct ... atttaagcagGTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAG
EST: gi|351039396|gb|FQ461263.1|FQ461263
EST:     CTTTGCGTGTTCAAATGGAAGTTCAAAGAAGATTGCATGAACAGCTTGAG                         GTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAGGGCAAATACCTGCAG
genomic: CTTTGCGTGTTCAAATGGAAGTTCAAAGAAGACTGCATGAACAGCTGGAGgttagtttct ... atttaagcagGTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAG
EST: gi|349823439|gb|FQ423250.1|FQ423250
EST:     CTTTGCGTGTTCAAATGGAAGTTCAAAGAAGATTGCATGAACAGCTTGAG                         GTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAG
genomic: CTTTGCGTGTTCAAATGGAAGTTCAAAGAAGACTGCATGAACAGCTGGAGgttagtttct ... atttaagcagGTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAG
EST: gi|83274985|gb|DV939081.1|DV939081
EST:     GTTCAAAGAAGACTGCATGAACAGCTGGAG                         GTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAG
genomic: GTTCAAAGAAGACTGCATGAACAGCTGGAGgttagtttct ... atttaagcagGTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAG
EST: gi|71868560|gb|DT017615.1|DT017615
EST:     CTTTGCGTGTTCAAATGGAAGTTCAAAGAAGACTGCATGAACAGCTGGAG                         GTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAG
genomic: CTTTGCGTGTTCAAATGGAAGTTCAAAGAAGACTGCATGAACAGCTGGAGgttagtttct ... atttaagcagGTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAG
EST: gi|351046057|gb|FQ441440.1|FQ441440
EST:     CTTTGCGTGTTCAAATGGAAGTTCAAAGAAGATTGCATGAACAGCTTGAG                         GTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAG
genomic: CTTTGCGTGTTCAAATGGAAGTTCAAAGAAGACTGCATGAACAGCTGGAGgttagtttct ... atttaagcagGTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAG
EST: gi|161713162|gb|FC062502.1|FC062502
EST:     CTTTGCGTGTTCAAATGGAAGTTCAAAGAAGACTGCATGAACAGCTGGAG                         GTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAG
genomic: CTTTGCGTGTTCAAATGGAAGTTCAAAGAAGACTGCATGAACAGCTGGAGgttagtttct ... atttaagcagGTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAG
EST: gi|30132603|gb|CB917942.1|CB917942
EST:     CTTTGCGTGTTCAAATGGAAGTTCAAAGAAGATTGCATGAACAGCTTGAG                         GTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAG
genomic: CTTTGCGTGTTCAAATGGAAGTTCAAAGAAGACTGCATGAACAGCTGGAGgttagtttct ... atttaagcagGTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAG
EST: gi|71877393|gb|DT026448.1|DT026448
EST:     CTTTGCGTGTTCAAATGGAAGTTCAAAGAAGACTGCATGAACAGCTGGAG                         GTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAG
genomic: CTTTGCGTGTTCAAATGGAAGTTCAAAGAAGACTGCATGAACAGCTGGAGgttagtttct ... atttaagcagGTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAG
EST: gi|349820030|gb|FQ404752.1|FQ404752
EST:     CTTTGCGTGTTCAAATGGAAGTTCAAAGAAGATTGCATGAACAGCTTGAG                         GTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAG
genomic: CTTTGCGTGTTCAAATGGAAGTTCAAAGAAGACTGCATGAACAGCTGGAGgttagtttct ... atttaagcagGTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAG
EST: gi|110374025|gb|EC938502.1|EC938502
EST:     CTTTGCGTGTTCAAATGGAAGTTCAAAGAAGACTGCATGAACAGCTGGAG                         GTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAG
genomic: CTTTGCGTGTTCAAATGGAAGTTCAAAGAAGACTGCATGAACAGCTGGAGgttagtttct ... atttaagcagGTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAG
EST: gi|33401619|gb|CF207246.1|CF207246
EST:     CTTTGCGTGTTCAAATGGAAGTTCAAAGAAGACTGCATGAACAGCTGGAG                         GTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAG
genomic: CTTTGCGTGTTCAAATGGAAGTTCAAAGAAGACTGCATGAACAGCTGGAGgttagtttct ... atttaagcagGTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAG
EST: gi|351046098|gb|FQ442476.1|FQ442476
EST:     CTTTGCGTGTTCAAATGGAAGTTCAAAGAAGATTGCATGAACAGCTTGAG                         GTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAGGGCAAATACCTGCAG
genomic: CTTTGCGTGTTCAAATGGAAGTTCAAAGAAGACTGCATGAACAGCTGGAGgttagtttct ... atttaagcagGTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAG
EST: gi|352777370|gb|FQ474004.1|FQ474004
EST:     TTGCGGT-TTCAAATGGAAGTTTCAAAGAAGACTGCATGAACAGCTGGAG                         GTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAG
genomic: TTGC-GTGTTCAAATGGAAG-TTCAAAGAAGACTGCATGAACAGCTGGAGgttagtttct ... atttaagcagGTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAG
EST: gi|351045231|gb|FQ451679.1|FQ451679
EST:     CTTTGCGTGTTCAAATGGAAGTTCAAAGAAGATTGCATGAACAGCTTGAG                         GTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAG
genomic: CTTTGCGTGTTCAAATGGAAGTTCAAAGAAGACTGCATGAACAGCTGGAGgttagtttct ... atttaagcagGTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAG
EST: gi|110427496|gb|EC993936.1|EC993936
EST:     CTTTGCGTGTTCAAATGGAAGTTCAAAGAAGATTGCATGAACAGCTTGAG                         GTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAG
genomic: CTTTGCGTGTTCAAATGGAAGTTCAAAGAAGACTGCATGAACAGCTGGAGgttagtttct ... atttaagcagGTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAG
EST: gi|71871109|gb|DT020164.1|DT020164
EST:     CTTTGCGTGTTCAAATGGAAGTTCAAAGAAGACTGCATGAACAGCTGGAG                         GTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAG
genomic: CTTTGCGTGTTCAAATGGAAGTTCAAAGAAGACTGCATGAACAGCTGGAGgttagtttct ... atttaagcagGTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAG
EST: gi|71871652|gb|DT020707.1|DT020707
EST:     CTTTGCGTGTTCAAATGGAAGTTCAAAGA-GACTGCATGAACAGCTGGAG                         GTTCAGCGCCATCTTCAACTTAGGATTGAAGCACA-GGCAAATACCTGCAG
genomic: CTTTGCGTGTTCAAATGGAAGTTCAAAGAAGACTGCATGAACAGCTGGAGgttagtttct ... atttaagcagGTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAG
EST: gi|71867598|gb|DT016653.1|DT016653
EST:     CTTTGCGTGTTCAAATGGAAGTTCAAAGAAGACTGCATGAACAGCTGGAG                         GTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAG
genomic: CTTTGCGTGTTCAAATGGAAGTTCAAAGAAGACTGCATGAACAGCTGGAGgttagtttct ... atttaagcagGTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAG
EST: gi|33401697|gb|CF207324.1|CF207324
EST:     CTTTGCGTGTTCAAATGGAAGTTCAAAGAAGACTGCATGAACAGCTGGAG                         GTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAG
genomic: CTTTGCGTGTTCAAATGGAAGTTCAAAGAAGACTGCATGAACAGCTGGAGgttagtttct ... atttaagcagGTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAG
EST: gi|351043504|gb|FQ428976.1|FQ428976
EST:     CTTTGCGTGTTCAAATGGAAGTTCAAAGAAGATTGCATGAACAGCTTGAG                         GTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAG
genomic: CTTTGCGTGTTCAAATGGAAGTTCAAAGAAGACTGCATGAACAGCTGGAGgttagtttct ... atttaagcagGTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAG
EST: gi|352790540|gb|FQ478180.1|FQ478180
EST:     CTTTGCGTGTTCAAATGGAAGTTCAAAGAAGATTGCATGAACAGCTTGAG                         GTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAG
genomic: CTTTGCGTGTTCAAATGGAAGTTCAAAGAAGACTGCATGAACAGCTGGAGgttagtttct ... atttaagcagGTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAG
EST: gi|83274811|gb|DV938907.1|DV938907
EST:     CTTTGCGTGTTCAAATGGAAGTTCAAAGAAGACTGCATGAACAGCTGGAG                         GTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAG
genomic: CTTTGCGTGTTCAAATGGAAGTTCAAAGAAGACTGCATGAACAGCTGGAGgttagtttct ... atttaagcagGTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAG
EST: gi|351055909|gb|FQ453370.1|FQ453370
EST:     CTTTGCGTGTTCAAATGGAAGTTCAAAGAAGATTGCATGAACAGCTTGAG                         GTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAG
genomic: CTTTGCGTGTTCAAATGGAAGTTCAAAGAAGACTGCATGAACAGCTGGAGgttagtttct ... atttaagcagGTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAG
EST: gi|71873299|gb|DT022354.1|DT022354
EST:     CTTTGCGTGTTCAAATGGAAGTTCAAAGAAGACTGCATGAACAGCTGGAG                         GTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAG
genomic: CTTTGCGTGTTCAAATGGAAGTTCAAAGAAGACTGCATGAACAGCTGGAGgttagtttct ... atttaagcagGTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAG
EST: gi|110358181|gb|EC922212.1|EC922212
EST:     CTTTGCGTGTTCAAATGGAAGTTCAAAGAAGACTGCATGAACAGCTGGAG                         GTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAG
genomic: CTTTGCGTGTTCAAATGGAAGTTCAAAGAAGACTGCATGAACAGCTGGAGgttagtttct ... atttaagcagGTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAG
EST: gi|352764976|gb|FQ473624.1|FQ473624
EST:     CTTTGCGTGTTCAAATGGAAGTTCAAAGAAGACTGCATGAACAGCTGGAG                         GTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAG
genomic: CTTTGCGTGTTCAAATGGAAGTTCAAAGAAGACTGCATGAACAGCTGGAGgttagtttct ... atttaagcagGTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAAGACTGCATGAACAGCTGGAGgttagtttctttgattggccaaatgcagcccaggctgtaggtctgtgtttagaagtggcctgtgcatttttgggctaacattagacactttgaacgattc

- - - - - - - - - - - - - - - - -  TGGAAG
- - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaagtgg