1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGGGTGCCATATCCAGGGTTGCCCAAGCGTGACAAACCACGGCGTGTGGAGCTCTATTTCTCAAGCTGGATCATCAGGGCTGgtgagtaatgccagttaaccttctaattttacttcattttttccttttgagtgtgtgcgcaatttggtagtggacattaattaacggaatttcttggttatcaaatgaatgtag
species | Vitis vinifera |
transcript | Vv05s0020g04870.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CAAACCACGGCGTGTGGAGCTCTATTTCTCAAGCTGGATCATCAGGGCTG TGGAATCCAGTAAAGGAGAAGGAATGTCTGCATGCGAGGTGAGCCTTGTACEST: gi|30252882|gb|CB970433.1|CB970433
genomic: CAAACCACGGCGTGTGGAGCTCTATTTCTCAAGCTGGATCATCAGGGCTGgtgagtaatg ... atgaatgtagTGGAATCCAGTAAAGGAGAAGGAATGTCTGCATGCGAGGTGAGCCTTGTAC
EST: CAAACCACGGCGTGTGGAGCTCTATTTCTCAAGCTGGATCATCAGGGCTG TGGAATCCAGTAACGGAGAAGGAATGTCTGCATGCGAGGTGAGCCTTGTACEST: gi|110386894|gb|EC951526.1|EC951526
genomic: CAAACCACGGCGTGTGGAGCTCTATTTCTCAAGCTGGATCATCAGGGCTGgtgagtaatg ... atgaatgtagTGGAATCCAGTAAAGGAGAAGGAATGTCTGCATGCGAGGTGAGCCTTGTAC
EST: CAAACCACGGCGTGTGGAGCTCTATTTCTCAAGCTGGATCATCAGGGCTG TGGAATCCAGTAAAGGAGAAGGAATGTCTGCATGCGAGGTGAGCCTTGTACEST: gi|32271923|gb|CD721082.1|CD721082
genomic: CAAACCACGGCGTGTGGAGCTCTATTTCTCAAGCTGGATCATCAGGGCTGgtgagtaatg ... atgaatgtagTGGAATCCAGTAAAGGAGAAGGAATGTCTGCATGCGAGGTGAGCCTTGTAC
EST: CAAACCACGGCGTGTGGAGCTCTATTTCTCAAGCTGGATCATCAGGGCTG TGGAATCCAGTAAAGGAGAAGGAATGTCTGCATGCGAGGTGAGCCTTGTACEST: gi|30327353|gb|CD010615.1|CD010615
genomic: CAAACCACGGCGTGTGGAGCTCTATTTCTCAAGCTGGATCATCAGGGCTGgtgagtaatg ... atgaatgtagTGGAATCCAGTAAAGGAGAAGGAATGTCTGCATGCGAGGTGAGCCTTGTAC
EST: CAAACCACGGCGTGTGGAGCTCTATTTCTCAAGCTGGATCATCAGGGCTG TGGAATCCAGTAAAGGAGAAGGAATGTCTGCATGCGAGGTGAGCCTTGTACEST: gi|110378113|gb|EC943229.1|EC943229
genomic: CAAACCACGGCGTGTGGAGCTCTATTTCTCAAGCTGGATCATCAGGGCTGgtgagtaatg ... atgaatgtagTGGAATCCAGTAAAGGAGAAGGAATGTCTGCATGCGAGGTGAGCCTTGTAC
EST: CAAACCACGGCGTGTGGAGCTCTATTTCTCAAGCTGGATCATCAGGGCTG TGGAATCCAGTAAAGGAGAAGGAATGTCTGCATGCGAGGTGAGCCTTGTACEST: gi|110384349|gb|EC948779.1|EC948779
genomic: CAAACCACGGCGTGTGGAGCTCTATTTCTCAAGCTGGATCATCAGGGCTGgtgagtaatg ... atgaatgtagTGGAATCCAGTAAAGGAGAAGGAATGTCTGCATGCGAGGTGAGCCTTGTAC
EST: CAAACCACGGCGTGTGGAGCTCTATTTCTCAAGCTGGATCATCAGGGCTG TGGAATCCAGTAAAGGAGAAGGAATGTCTGCATGCGAGGTGAGCCTTGTACEST: gi|32249475|gb|CD715294.1|CD715294
genomic: CAAACCACGGCGTGTGGAGCTCTATTTCTCAAGCTGGATCATCAGGGCTGgtgagtaatg ... atgaatgtagTGGAATCCAGTAAAGGAGAAGGAATGTCTGCATGCGAGGTGAGCCTTGTAC
EST: CAAACCACGGCGTGTGGAGCTCTATTTCTCAAGCTGGATCATCAGGGCTG TGGAATCCAGTAAAGGAGAAGGAATGTCTGCATGCGAGGTGAGCCTTGTACEST: gi|352795477|gb|FQ476592.1|FQ476592
genomic: CAAACCACGGCGTGTGGAGCTCTATTTCTCAAGCTGGATCATCAGGGCTGgtgagtaatg ... atgaatgtagTGGAATCCAGTAAAGGAGAAGGAATGTCTGCATGCGAGGTGAGCCTTGTAC
EST: CAAACCACGGCGTGTGGAGCTCTATTTCTCAAGCTGGATCATCAGGGCTG TGGAATCCAGTAAAGGAGAAGGAATGTCTGCATGCGAGGTGATCCTTGTACEST: gi|161718153|gb|FC065659.1|FC065659
genomic: CAAACCACGGCGTGTGGAGCTCTATTTCTCAAGCTGGATCATCAGGGCTGgtgagtaatg ... atgaatgtagTGGAATCCAGTAAAGGAGAAGGAATGTCTGCATGCGAGGTGAGCCTTGTAC
EST: CAAACCACGGCGTGTGGAGCTCTATTTCTCAAGCTGGATCATCAGGGCTG TGGAATCCAGTAAAGGAGAAGGAATGTCTGCATGCGAGGTGAGCCTTGTACEST: gi|110361567|gb|EC925049.1|EC925049
genomic: CAAACCACGGCGTGTGGAGCTCTATTTCTCAAGCTGGATCATCAGGGCTGgtgagtaatg ... atgaatgtagTGGAATCCAGTAAAGGAGAAGGAATGTCTGCATGCGAGGTGAGCCTTGTAC
EST: CAAACCACGGCGTGTGGAGCTCTATTTCTCAAGCTGGATCATCAGGGCTG TGGAATCCAGTAAAGGAGAAGGAATGTCTGCATGCGAGGTGAGCCTTGTACEST: gi|32248982|gb|CD714801.1|CD714801
genomic: CAAACCACGGCGTGTGGAGCTCTATTTCTCAAGCTGGATCATCAGGGCTGgtgagtaatg ... atgaatgtagTGGAATCCAGTAAAGGAGAAGGAATGTCTGCATGCGAGGTGAGCCTTGTAC
EST: CAAACCACGGCGTGTGGAGCTCTATTTCTCAAGCTGGATCATCAGGGCTG TGGAATCCAGTAAAGGAGAAGGAATGTCTGCATGCGAGGTGAGCCTTGTACEST: gi|161719072|gb|FC065699.1|FC065699
genomic: CAAACCACGGCGTGTGGAGCTCTATTTCTCAAGCTGGATCATCAGGGCTGgtgagtaatg ... atgaatgtagTGGAATCCAGTAAAGGAGAAGGAATGTCTGCATGCGAGGTGAGCCTTGTAC
EST: CAAACCACGGCGTGTGGAGCTCTATTTCTCAAGCTGGATCATCAGGGCTG TGGAATCCAGTAAAGGAGAAGGAATGTCTGCATGCGAGGTGAGCCTTGTACEST: gi|30324249|gb|CD007511.1|CD007511
genomic: CAAACCACGGCGTGTGGAGCTCTATTTCTCAAGCTGGATCATCAGGGCTGgtgagtaatg ... atgaatgtagTGGAATCCAGTAAAGGAGAAGGAATGTCTGCATGCGAGGTGAGCCTTGTAC
EST: CAAACCACGGCGTGTGGAGCTCTATTTCTCAAGCTGGATCATCAGGGCTG TGGAATCCAGTAAAGGAGAAGGAATGTCTGCATGCGAGGTGAGCCTTGTACEST: gi|71855922|gb|DT004977.1|DT004977
genomic: CAAACCACGGCGTGTGGAGCTCTATTTCTCAAGCTGGATCATCAGGGCTGgtgagtaatg ... atgaatgtagTGGAATCCAGTAAAGGAGAAGGAATGTCTGCATGCGAGGTGAGCCTTGTAC
EST: CAAACCACGGCGTGTGGAGCTCTATTTCTCAAGCTGGATCATCAGGGCTG TGGAATCCAGTAAAGGAGAAGGAATGTCTGCATGCGAGGTGAGCCTTGTACEST: gi|33409613|gb|CF215240.1|CF215240
genomic: CAAACCACGGCGTGTGGAGCTCTATTTCTCAAGCTGGATCATCAGGGCTGgtgagtaatg ... atgaatgtagTGGAATCCAGTAAAGGAGAAGGAATGTCTGCATGCGAGGTGAGCCTTGTAC
EST: CAAACCACGGCGTGTGGAGCTCTATTTCTCAAGCTGGATCATCAGGGCTG TGGAATCCAGTAAAGGAGAAGGAATGTCTGCATGCGAGGTGAGCCTTGTACEST: gi|27583867|gb|CB006562.1|CB006562
genomic: CAAACCACGGCGTGTGGAGCTCTATTTCTCAAGCTGGATCATCAGGGCTGgtgagtaatg ... atgaatgtagTGGAATCCAGTAAAGGAGAAGGAATGTCTGCATGCGAGGTGAGCCTTGTAC
EST: CAAACCACGGCGTGTGGAGCTCTATTTCTCAAGCTGGATCATCAGGGCTG TGGAATCCAGTAAAGGAGAAGGAATGTCTGCATGCGAGGTGAGCCTTGTACEST: gi|110398278|gb|EC964527.1|EC964527
genomic: CAAACCACGGCGTGTGGAGCTCTATTTCTCAAGCTGGATCATCAGGGCTGgtgagtaatg ... atgaatgtagTGGAATCCAGTAAAGGAGAAGGAATGTCTGCATGCGAGGTGAGCCTTGTAC
EST: CAAACCACGGCGTGTGGAGCTCTATTTCTCAAGCTGGATCATCAGGGCTG TGGAATCCAGTAAAGGAGAAGGAATGTCTGCATGCGAGGTGAGCCTTGTAC
genomic: CAAACCACGGCGTGTGGAGCTCTATTTCTCAAGCTGGATCATCAGGGCTGgtgagtaatg ... atgaatgtagTGGAATCCAGTAAAGGAGAAGGAATGTCTGCATGCGAGGTGAGCCTTGTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGGTGCCATATCCAGGGTTGCCCAAGCGTGACAAACCACGGCGTGTGGAGCTCTATTTCTCAAGCTGGATCATCAGGGCTGgtgagtaatgccagttaaccttctaattttacttcattttttccttttgagtgtgtgcgcaatttggtagtggacattaattaacggaatttcttggttatcaaatgaatgtag
- - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA