Sequence
atgc intronic sequence ATGC exonic sequenceAAACCTGCAAACCGGCCAGCTGACCCAGAAAGTATAACTGATGAGGAGAGGTTTATGTTCCGCAAGCTTGGTTTGAGAATGAAAGCTTTCTTACTTCTCGgtaaaatactgtccacttgtcaaatttgtcatgctttgtctttcagggtatagtaactatggaggtgtaattcttatttcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0020g04770.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA20G34730.1 (Glycine max), 5'ss of exon 5
AAACCTGCAAACCGGCCAGCTGACCCAGAAAGTATAACTGATGAGGAGAGGTTTATGTTCCGCAAGCTTGGTTTGAGAATGAAAGCTTTCTTACTTCTCGgtaaaatactgtccacttg---tcaaatttgtcatgcttt---gtctttcagggtatagtaactatggaggtgtaattcttatttcag------------
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AAGCCATCAGAATACAAAGCAGATCCTGAAAGTATAACTGATGAAGAGAGATTTATGTTTCGCAAATTAGGATTGAGGATGAAAGCTTTCTTACTTCTTGgtaaagctctatctaaataaacttgttcttactatattttaggaccactttacttcacttcaatactaagttgtatggaacaaatcagatacaaaaggtt
upper sequence: Vv05s0020g04770.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT3G23070.1 (Arabidopsis thaliana), 5'ss of exon 5
AAACCTGCAAACCGGCCAGCTGACCCAGAAAGTATAACTGATGAGGAGAGGTTTATGTTCCGCAAGCTTGGTTTGAGAATGAAAGCTTTCTTACTTCTCGgtaaaat-actgtccacttgtcaaatttgtcatgctttgtctttcagggtatagtaact----atggaggtgtaattcttatttcag
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AAGCCCGCAGAGCAGAGAGAAGATCCAGAAAGCATAACTGATGAAGAGAGATTTATGTTCCGCAAGCTTGGCTTGAAAATGAAAGCTTTCTTACTTCTAGgtaaaattatcaataacagatgagtgtagtggagtgtgttctataaatgctcagactcttaaaacaaacctgaaaatgttgcttcag
upper sequence: Vv05s0020g04770.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT4G14510.1 (Arabidopsis thaliana), 5'ss of exon 5
AAACCTGCAAACCGGCCAGCTGACCCAGAAAGTATAACTGATGAGGAGAGGTTTATGTTCCGCAAGCTTGGTTTGAGAATGAAAGCTTTCTTACTTCTCGgtaaaa-----tactgtccacttgt-------------caaatttgtcatgctt-tgtctttcagggtatag---taactatggaggtgtaattc-ttatttcag
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AAGCCAGCAGAGCAGAGAACAGACCTTGAGGGCATAACAGAAGAAGAGAGATTTATGTTCCAAAAGCTCGGATTGAAGATGAAAGCTTTCTTACTTCTTGgtaaaccattttattatcaatatgtgggctgatgtagttaagtatgtttgacctgtgttctctgggatattgacttgtctgagaaacttgaattgattgctccagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110728229|gb|EE103616.1|EE103616EST: GTTTATGTTCCGCAAGCTTGGTTTGAGAATGAAAGCTTTCTTACTTCTCG GTAGGCGTGGAGTTTTTTCTGGGACAGTGGAGAATATGCATTTGCATTGGA
genomic: GTTTATGTTCCGCAAGCTTGGTTTGAGAATGAAAGCTTTCTTACTTCTCGgtaaaatact ... cttatttcagGTAGGCGTGGAGTTTTTTCTGGGACAGTGGAGAATATGCATTTGCATTGGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAACCTGCAAACCGGCCAGCTGACCCAGAAAGTATAACTGATGAGGAGAGGTTTATGTTCCGCAAGCTTGGTTTGAGAATGAAAGCTTTCTTACTTCTCGgtaaaatactgtccacttgtcaaatttgtcatgctttgtctttcagggtatagtaactatggaggtgtaattcttatttcag
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