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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACAAATGGATGACATATGGAGAAGCAGGTACTGCTCGATCAGCAATTGGTTCTGGTTTAATATACTATGGAATACCGAAAgtgagttgtccaaattctaaattaagtttgaacattgtcatgcactcttaattttgttcttggattggacttatgtttttctaaaatgttttgtgaaaacatctactcaagattttcaaatccattctttcttaacatttggttatccattgattttcctttttttttttttaaattttctttaatgctgtaacag

Basic information

species Vitis vinifera
transcript Vv05s0020g03080.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g03080.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os12g04990.1 (Oryza sativa), 5'ss of exon 5
GTACAAATGGATGACATATGGAGAAGCAGGTACTGCTCGATCAGCAATTGGTTCTGGTTTAATATACTATGGAATACCGAAAgtgagttgtccaaattctaaattaagtttgaacattgtcatgcactcttaattttgttcttggattggacttatgtttttctaaaatgttttgtgaaaacatctactcaagattttcaaatccattc-tttcttaacatttggttatccattgattttcctttttttttttttaaattttctttaatgctgtaacag
 ||||||||||||||||||||||||||  ||||    ||  | || || ||||||||| | || ||| ||||||||||  ||||||||  |    ||   ||          | ||  |||     ||  | |||||        |  || |  || || |   | | ||   |    | | | |   |   | |   |  |   |||| ||| || | | |||   ||  | | ||||||      |                               
CTACAAATGGATGACATATGGAGAAGCTAGTACAAGCCGGACTGCGATAGGTTCTGGTCTTATTTACCATGGAATACCTGAAgtgagtcattatgatctcaa--------caagcaccgtc-----cttctgattttaactactaacagg-cagatcttgtcacacattgccataatgatatagcatttgtggttacacttacagattcctttttttaaacttg--cattaaataattttctaaaactgaaccag------------------------

upper sequence: Vv05s0020g03080.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os11g04980.1 (Oryza sativa), 5'ss of exon 5
GTACAAATGGATGACATATGGAGAAGCAGGTACTGCTCGATCAGCAATTGGTTCTGGTTTAATATACTATGGAATACCGAAAgtgagttgtccaaattctaaattaagtttgaacattgtcatgcactcttaattttgttcttggattggacttatgtttttctaaaatgttttgtgaaaacatctactcaagattttcaaatccattctttcttaacatttggttatccattgattttcctttttttttttttaaattttctttaatgctgtaacag
 ||||||||||||||||||||||||||  ||||     |  | ||||| ||||||||| | || ||  ||||||||||  ||||||||  |     |   ||          |  |  ||| | |  | || |  | ||    ||    ||  | |||    |    |   |     || |  | || | |   ||    | ||| || ||| || |             | |   |||  |||||||   | | ||                     
CTACAAATGGATGACATATGGAGAAGCTAGTACAAACAGGACTGCAATAGGTTCTGGTCTTATTTATCATGGAATACCTGAAgtgagtcataatggtcgcaa--------caagtaccgtccttctttttttaactagtagcagg--cagatct-tgtcacacatggacaatgatataacatttgtatttacacttagagagtccctttttttttta-------------acttgctttattttttttaactctgaaccag-----------------

upper sequence: Vv05s0020g03080.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA20G28200.1 (Glycine max), 5'ss of exon 5
GTACAAATGGATGACATATGGAGAAGCAGGTACTGCTCGATCAGCAATTGGTTCTGGTTTAATATACTATGGAATACCGAAAgtgagttgtccaaattctaaatt-aagtttgaacattgtcatgcactcttaattttgttcttggattggacttatgtttttctaaaatgttttgtgaaaacatctactcaagattttcaaatccattctttcttaacatttggttatccattgattttcctttttttttttttaaattttctttaatgctgtaacag
||||||||||||||||||||||||||||||||| || || |||||||| ||||||||||| || || |||||||| |  || |||| |   | | ||| ||  || | |  ||| |||| |  | || | || |    ||        || |   ||   |||  |   | |||| |                                                                                                      
GTACAAATGGATGACATATGGAGAAGCAGGTACGGCCCGGTCAGCAATAGGTTCTGGTTTGATTTATTATGGAATCCAAAAGgtgaatg--ctagattgtagtttcatggctgatcattat--ttcattttttacaaagtatca----tgtaaccattggtttacatgttcttttttag----------------------------------------------------------------------------------------------------

upper sequence: Vv05s0020g03080.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA10G39540.1 (Glycine max), 5'ss of exon 5
GTACAAATGGATGACATATGGAGAAGCAGGTACTGCTCGATCAGCAATTGGTTCTGGTTTAATATACTATGGAATACCGAAAgtgagttgtccaaattctaaatt-aagtttgaacattgtcatgcactcttaattttgttcttggattggacttatgtttttctaaaatgttttgtgaaaacatctactcaagattttcaaatccattctttcttaacatttggttatccattgattttcctttttttttttttaaattttctttaatgctgtaacag
|||||||||||| |||||||||||||||||||| || || |||||||| ||||||||||| || ||  |||||||    || |||| |   | | ||| ||  || | | ||||  ||| |  |    | |  |   | |      ||   ||   || ||| |       ||||  |                                                                                                     
GTACAAATGGATAACATATGGAGAAGCAGGTACGGCCCGGTCAGCAATAGGTTCTGGTTTGATTTATCATGGAATCGAAAAGgtgaatg--ctagattgtagtttcatggttgattattattttattttttacaaagtatc-----atgtaaccattggtttacatgctcatttttag-----------------------------------------------------------------------------------------------------

upper sequence: Vv05s0020g03080.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT3G05970.1 (Arabidopsis thaliana), 5'ss of exon 5
GTACAAATGGATGACATATGGAGAAGCAGGTACTGCTCGATCAGCAATTGGTTCTGGTTTAATATACTATGGAATACCGAAAgtgagttgtccaaattctaaattaagtttgaacattgtcatgcactcttaattttgttcttgga-ttggacttatgtttttctaaaatgttttgtgaaaacatctactcaagattttcaaatccattctttcttaacatttggttatccattgattttcctttttttttttttaaattttctttaatgctgtaacag
 |||||||||||||||||||||||||| ||||| ||  || | ||  | |||||||||||  |  |  | ||||| || |  || | || |   | |  ||   |         | |  | ||  | | |||| ||||    | || |      | |||||||||   |                                                                                                              
CTACAAATGGATGACATATGGAGAAGCTGGTACAGCAAGAACTGCTTTAGGTTCTGGTTTGGTTCATCACGGAATCCCCATGgtaaattattggattcttactctc--------cttcctgattgatttttaagtttgcagctagactcaagtctctgtttttcttctaccag----------------------------------------------------------------------------------------------------------