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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGTGGAGCATCCATATGTTCCTCTTACATCTGTTCTTAACAAATTAGGTCTTTCACAAACTGTTTTGGTGAATTTGGCATTACACTTGGTCAGTGAAGGgtaagtatgctgctatccttattctcaatgtgttcttttagtggattctgagattgcagatgcattgttttctgtatcagtgatttcaatagggttagtg...

Basic information

species Vitis vinifera
transcript Vv05s0020g03060.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g03060.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA20G28190.1 (Glycine max), 5'ss of exon 6
CTGTGGAGCATCCATATGTTCCTCTTACATCTGTTCTTAACAAATTAGGTCTTTCACAAACTGTTTTGGTGAATTTGGCATTACACTTGGTCAGTGAAGGgtaagtatgctgctatccttat-tctcaatgtgttcttttagtggattctgagattgcagatgcattgttttctgtatcagtgatttcaatagggttagtg----
 |||| | ||||||||||| |||||||||||||||||||||||||||||||| ||| | ||||||||||||||| |||||||| |||||||||||||||||| ||| | ||  | |    || | | | | | |  ||| ||| |   |   | |||   || |  |   || ||        |    | | || | |       
ATGTGCAACATCCATATGTACCTCTTACATCTGTTCTTAACAAATTAGGTCTATCAAAGACTGTTTTGGTGAATCTGGCATTAAACTTGGTCAGTGAAGGgtgagttttcttatttttcaatcttttactttatgatttcagtag---caatgtttgtttataccattcattttgag--gacaaaactagttggctcaaatcaaa

upper sequence: Vv05s0020g03060.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA10G39550.2 (Glycine max), 5'ss of exon 5
CTGTGGAGCATCCATATGTTCCTCTTACATCTGTTCTTAACAAATTAGGTCTTTCACAAACTGTTTTGGTGAATTTGGCATTACACTTGGTCAGTGAAGGgt-aagtatgct-----gctatccttattctcaatgtgttcttttagtggattctgagattgcagatgcattgttttctgtatcagtgatttcaatagggttagtg
 |||| | ||||||||||| ||||||||||||||||||||||| || ||||| ||| | ||||||||||||||| |||||||| |||||||||||||||||| |||| | ||     |  |  ||| | ||  ||| |||    |||     | ||    | ||  |  |   ||   | |       |    | | || |     
ATGTGCAACATCCATATGTACCTCTTACATCTGTTCTTAACAAGTTGGGTCTATCAAAGACTGTTTTGGTGAATCTGGCATTAAACTTGGTCAGTGAAGGgtgaagttttcttatttgtcaatcttgtactttatg-gtttcagtagcaatgtttgtttatacaattataccattcattttgaggacaaaactagttggct-----

upper sequence: Vv05s0020g03060.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA11G00680.1 (Glycine max), 5'ss of exon 5
CTGTGGAGCATCCATATGTTCCTCTTACATCTGTTCTTAACAAATTAGGTCTTTCACAAACTGTTTTGGTGAATTTGGCATTACACTTGGTCAGTGAAGGgtaagtatgctgctatccttattct----caatgtgttcttttagtggattctgagattgcagatgcattgttttctgtatcagtgatttcaatagggttagtg
 |||||||||||| |||    ||||||||||||| |||||||||||||  |  ||| | ||||||||||||||| |||||||| ||||| ||||  |||||| ||| | ||  | |  |   |||    || | ||   ||  ||    || |  | |||| ||| |||| | |     |  | |  ||   |||  | |    
ATGTGGAGCATCCTTATACATCTCTTACATCTGTCCTTAACAAATTAGACCCATCAAAGACTGTTTTGGTGAATCTGGCATTAAACTTGATCAGCAAAGGgtgagttttcttatttgttggatcttatacattctgcaattgcagcactttttttgcttgccgattcattttgtggaacaa-atttgttctgataatgatg---