Sequence
atgc intronic sequence ATGC exonic sequenceGCCTCGACAGTGTGGTGACCCTGGTAATTTGTTCACGGGCTACACTAGTAATCCATATGCAGAATTCAATATTTTTGGAGACCCGTTTGCTGCATACCTGgtagggcagttgtttatatgtttgtagtaccatttataaatttaacagtcttttataagctaaaacatctgcatttagcagtaacatttcttttttctttaattgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0020g02200.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA07G38300.1 (Glycine max), 5'ss of exon 3
GCCTCGACAGTGTGGTGACCCTGGTAATTTGTTCACGGGCTACACTAGTAATCCATATGCAGAATTCAATATTTTTGGAGACCCGTTTGCTGCATACCTGgtagggcagttgtttatatgtttgtagtaccatttataaatttaacagtcttttataagctaaaacatctgcatttagcagtaacatttcttttttctttaattgcag
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GCCTATGCAGTGTGGTGACCGTGGCAATATGTTCACAGATTATAATACCAACCCTTATGCAGAGTTCAATATATTTGGAGACCCTTTTGCAGCATACCAGgtcagaca----tttcgatttacatcaaaccagttcttgctttaaaagtaaattattgac--acaccttattagttagtaatcagagaattgtgctattttttttc--
upper sequence: Vv05s0020g02200.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA17G02440.1 (Glycine max), 5'ss of exon 4
GCCTCGACAGTGTGGTGACCCTGGTAATTTGTTCACGGGCTACACTAGTAATCCATATGCAGAATTCAATATTTTTGGAGACCCGTTTGCTGCATACCTGgtagggcagttgtttatatgtttgtagtaccat-ttataaatttaacagtcttttataagctaaaacatctgcatttagcagtaacatttcttttttctttaattgcag
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GCCAAGGCAGTGTGGTGAGCGTGGCAATATGTTCACAGATTATAATACTAACCCTTATGCAGAATTTAATATATTTGGAGACCCTTTTGCAGCATACCAGgtcagacatacatttcgatatgcataaaaccaaatccttgcttcaaaagtaaattattaac--acaccttattagttggtaatcagataattgtgctatttt-------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161710706|gb|FC060284.1|FC060284EST: GGAGACCCGTTTGCTGCATACCTG GTACTGCATTCTGGAATTCCACTCACCCTTGTTCCCCTGGATGCAACAAAC
genomic: GGAGACCCGTTTGCTGCATACCTGgtagggcagt ... ttaattgcagGTACTGCATTCTGGAATTCCACTCACCCTTGTTCCCCTGGATGCAACAAAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCCTCGACAGTGTGGTGACCCTGGTAATTTGTTCACGGGCTACACTAGTAATCCATATGCAGAATTCAATATTTTTGGAGACCCGTTTGCTGCATACCTGgtagggcagttgtttatatgtttgtagtaccatttataaatttaacagtcttttataagctaaaacatctgcatttagcagtaacatttcttttttctttaattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC