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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGTTGGCTAGCATGCCTATTGAGTTGGAGGGCTATATCCGTCCTGGGTGTATCATCTTAACAATTTTTATTGCAATGCCAAAGTTTATGTGGGACAAGgtatgtttagagatgctttatatagcactttttggggttacagtgaggttaatgttgttgactacattgttaatgggtgatgattggtatttgcatacaa...

Basic information

species Vitis vinifera
transcript Vv05s0020g02160.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g02160.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os05g33810.1 (Oryza sativa), 5'ss of exon 5
GTGGTTGGCTAGCATGCCTATTGAGTTGGAGGGCTATATCCGTCCTGGGTGTATCATCTTAACAATTTTTATTGCAATGCCAAAGTTTATGTGGGACAAGgtatgtttagagatgcttta-tatagcactttttggggttacagtgaggttaatgttgttgactacattgttaatgggtgatgattggtatttgcatacaa
|||| |  ||||||||||| ||||  ||||||||||||| |||||||| ||||  || |||||  | ||| ||||||||||| |   ||||||||||||||||||  |     | ||  | |     |   ||      | ||  |  |   || || |||  | |||    |    |   |      |||| |  |    
GTGGCTTTCTAGCATGCCTGTTGAACTGGAGGGCTATATTCGTCCTGGTTGTACAATTTTAACTGTATTTGTTGCAATGCCACAACATATGTGGGACAAGgtatggatgcttgtactaaaatgccaaatcattacttagtccaaaggaggacatttttttggatgcatccaaatgaagacctaccaaatattggtctttc-

upper sequence: Vv05s0020g02160.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G109354_T01 (Zea mays), 5'ss of exon 5
GTGGTTGGCTAGCATGCCTATTGAGTTGGAGGGCTATATCCGTCCTGGGTGTATCATCTTAACAATTTTTATTGCAATGCCAAAGTTTATGTGGGACAAGgtatgtttagagatgctttatatagcac--tttttggggttacag-tgaggttaat-gttgttgactacattgttaatgggtgatgattggtatttgcatacaa
 ||||||| |||||||||| |||| ||||||||||| || ||||| || ||||| || |||||  | ||||||||||||||| ||  ||||||||||||||||||   |    |  |||||||   ||     ||    || ||    |  | ||  | || ||| ||  || |  ||   |     ||   || |    |   
ATGGTTGGGTAGCATGCCTGTTGAATTGGAGGGCTACATTCGTCCGGGTTGTATTATTTTAACTGTATTTATTGCAATGCCACAGCATATGTGGGACAAGgtatgcc-atgttttttttatattatacaacagttatcttttcaaaccaaatgaacagatgctgaata-gttttgtattattctcctttaccatgtatcgat--

upper sequence: Vv05s0020g02160.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA13G28460.1 (Glycine max), 5'ss of exon 5
GTGGTTGGCTAGCATGCCTATTGAGTTGGAGGGCTATATCCGTCCTGGGTGTATCATCTTAACAATTTTTATTGCAATGCCAAAGTTTATGTGGGACAAGgtatg--ttta----gagatgctttatatagcactttttggggttacagtgaggt--taatgttgttgacta-cattgttaatgggtgatgattggtatttgcatacaa
 |||||||| || |||||| | ||||||||||| |||||||| ||||||||||  ||| | |||||||||||||||||||| ||  | ||||||   || ||| |  || |    ||  | ||||| ||      || | | || |   | | ||  |  | ||      || | |    |||   |||  | ||   |          
ATGGTTGGCAAGTATGCCTGTGGAGTTGGAGGGATATATCCGCCCTGGGTGTACGATCCTGACAATTTTTATTGCAATGCCTAACATCATGTGGATAAATgtaagggttcaagttgatgttctttacattatgtgttcttgtgtcatgtttaagtggtcttattaccagttaacttccacaatatttgactaatgaactg---------

upper sequence: Vv05s0020g02160.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA15G10620.1 (Glycine max), 5'ss of exon 5
GTGGTTGGCTAGCATGCCTATTGAGTTGGAGGGCTATATCCGTCCTGGGTGTATCATCTTAACAATTTTTATTGCAATGCCAAAGTTTATGTGGGACAAGgtatgt-ttagagatgctttatatagcactttttggggttacagtgaggttaatgttgt-tgactacattgttaatgggtgatgattggtatttgcatacaa
 |||||||| |  |||||| | || ||||| || |||||||| ||||||||||  ||| | ||| |||||||||||||||| ||  ||||||||   |  ||| |  ||  |  || | |   |  || | | |||   |   || | | | | || || | | |||   ||||   |        | | | |   | ||  
ATGGTTGGCAAATATGCCTGTAGAATTGGAAGGATATATCCGCCCTGGGTGTACGATCCTGACAGTTTTTATTGCAATGCCTAACATTATGTGGATAACTgtaagggttcaacttgatgttctttacattatgtggttcttgtgtcatggttaagtggtcttattac-cagttacctgccacaatattggactaataaact-

upper sequence: Vv05s0020g02160.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT5G18830.3 (Arabidopsis thaliana), 5'ss of exon 5
GTGGTTGGCTAGCATGCCTATTGAGTTGGAGGGCTATATCCGTCCTGGGTGTATCATCTTAACAATTTTTATTGCAATGCCAAAGTTTATGTGGGACAAGgtatgtttagagatgctttatatagcactttttggggttacagtgaggttaatgttgttgactacattgttaatgggtgatgattggtatttgcatacaa--
 |||||||| | ||||||| ||||| |||||||||||||||| || || ||||  || || ||  | ||||| ||||||||| || |||||||||  ||||||  |   |  ||  ||||   | || ||||   | | |   ||  |   |        |  | |||||| ||      |   | ||| |  |     |  
ATGGTTGGCCAACATGCCTGTTGAGCTGGAGGGCTATATCCGCCCAGGATGTACAATTTTGACTGTCTTTATAGCAATGCCAGAGATTATGTGGGCGAAGgtacatcctgttatcttttactcatca-ttttcatgttcatgatgccgc-gacacaacataagaaattgtttattttcagtaggttgtagtctcgagatatg