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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTAGAACAGATGTCCTTCTAAATGCAGAAAAAGGAGTACTGGAGTTTGGTGGATGTGTTCTTAGATTGGCAGGACTTTACATATCCTTTCAGATACTTGAgttgtgagatttacatctatatttgtaagagagatttcagggattcatggaggaaatcagtatcatattcttagtaaccttaactattggcacaaagcagatag

Basic information

species Vitis vinifera
transcript Vv05s0020g01880.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g01880.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA08G09370.1 (Glycine max), 5'ss of exon 4
--------------------CTAGAACAGATGTCCTTCTAAATGCAGAAAAAGGAGTACTGGAGTTTGGTGGATGTGTTCTTAGATTGGCAGGACTTTACATATCCTTTCAGATACTTGAgttgtgagatttacatctatatttgtaagagagatttcagggattcatggaggaaatcagtatcatattcttagtaaccttaactattggcacaaagcagatag
                    |  ||   |||||||||||||| || ||||| |  ||||||||||||||||| |||||||| |||||||||||||| || ||||||||      |    | || | ||  | |||   |||||  |        || |  |   |||| |     ||   | | || ||| ||| |||||| || | |   ||           
TGTGCCTATCGGGAGGAGCCCCGGAGTTGATGTCCTTCTAAAAGCCGAAAATGTGGTACTGGAGTTTGGTGGCTGTGTTCTAAGATTGGCAGGACTATATatatccttggttggatgcaaattattaggatcacaaa-atattgtttt------ttacttgtgatcattgccactat-gcttttat-ttcatagcaaccttgaccaattttac-----------

upper sequence: Vv05s0020g01880.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA05G26450.1 (Glycine max), 5'ss of exon 4
--------------------CTAGAACAGATGTCCTTCTAAATGCAGAAAAAGGAGTACTGGAGTTTGGTGGATGTGTTCTTAGATTGGCAGGACTTTACATATCCTTTCAGATACTTGAgttgtgagatttacatctatatttgtaagagagatttcagggattcatggaggaaatcagtatcatattcttagtaaccttaactattggcacaaagcagatag
                    | |||   |||||||||||||| || ||||| |  ||||||||||||||||| |||||| | |||||||| ||||| || ||||||||      | |  | || | ||  | ||  | | | ||||   |   |  | || ||| ||| |     ||   | | || ||  ||| |||||| || | |   ||           
TGTGCCTATTGGGAGGAGCCCCAGAGTTGATGTCCTTCTAAAAGCTGAAAATGTGGTACTGGAGTTTGGTGGCTGTGTTGTGAGATTGGCGGGACTATATatatccttggttggattcaaattattaggatcac--caaaaattgtttta---acctgagtgat-cattgccactat-gcttttat-ttaatagcaaccttgaccaattttac-----------

upper sequence: Vv05s0020g01880.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA15G10460.1 (Glycine max), 5'ss of exon 4
--------------------CTAGAACAGATGTCCTTCTAAATGCAGAAAAAGGAGTACTGGAGTTTGGTGGATGTGTTCTTAGATTGGCAGGACTTTACATATCCTTTCAGATACTTGAgttgtgagatttacatctat--atttgtaagagagatttcagggattcatggaggaaatcagtatcatattcttagtaaccttaactattggcacaaagcagatag
                    | || || |||||||||||||| || ||||||  ||| |||||||||||||| | |||| | ||| || | |||||||| |||||||||   | | |    ||   ||  || || ||||  |||  |  | | | ||      ||| ||   |   |||||| |     |  |     | |  |   ||| ||      |     
GGTGCCAACAGGGAGGAGTCCCAGGACTGATGTCCTTCTAAAAGCTGAAAAAATAGTGCTGGAGTTTGGTGGTTCTGTTTTAAGACTGTCTGGACTTTATatatccttttcaaaattcagtttactaggattccaactattcattcatctgggtggttatttctatt-attatgtttatcagtttatgtctagtgtctgcttccaaccttgacattttaaac----

upper sequence: Vv05s0020g01880.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: EFJ23653 (Selaginella moellendorffii), 5'ss of exon 4
---CTAGAACAGATGTCCTTCTAAATGCAGAAAAAGGAGTACTGGAGTTTGGTGGATGTGTTCTTAGATTGGCAGGACTTTACATATCCTTTCAGATACTTGAgttgtgagatttacatctatatttgtaagagagatttcagggattcatggaggaaatcagtatcatattcttagtaaccttaactattggcacaaagcagatag
   | || || |||    |||||  ||| ||  | |   | ||  |  | || ||    ||| | ||||||||||||||||||||||||||||    |   |   |  | ||||| |   | | ||     ||      | ||     ||  |                                                      
GTCCCAGGACTGATACGATTCTAGCTGCTGAGGAGGAGATTCTCAAAGTCGGAGGGAACGTTGTGAGATTGGCAGGACTTTACATATCCTTTCCCGCAAA-

upper sequence: Vv05s0020g01880.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: EFJ34402 (Selaginella moellendorffii), 5'ss of exon 4
--------------------CTAGAACAGATGTCCTTCTAAATGCAGAAAAAGGAGTACTGGAGTTTGGTGGATGTGTTCTTAGATTGGCAGGACTTTACATATCCTTTCAGATACTTGAgttgtgagatttacatctatatttgtaagagagatttcagggattcatggaggaaatcagtatcatattcttagtaaccttaactattggcacaaagcagatag
                    | || || |||    |||||  ||| ||  | |   | ||  |  | || ||    | | | ||||||||||||||||||||||||||||    |   |   |  | ||||| |   | | ||     ||   |  ||                                                                  
AGTTGCCAAAGGAAGAAGTCCCAGGACTGATACGATTCTAGCTGCTGAGGAGGAGATTCTCAAAGTCGGAGGGAACGCTGTGAGATTGGCAGGACTTTACatatcctttctcgcaaa-gttcttcgcgattttcgattgtgttgccttgacttagctcgccac-------------------------------------------------------------