Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGATCAgtgagtgccactcctttggtagtttctcttgtttgatgttttaaacattatgtaatttcattttatctaaacataactag

Basic information

species Vitis vinifera
transcript Vv05s0020g01440.t01
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71877047|gb|DT026102.1|DT026102
EST:     TTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGATCA                         GAATTTCAAGACCTAAGGACCACTCTTCAGCAGCAACAAGAGGATGTTACT
genomic: TTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGATCAgtgagtgcca ... acataactagGAATTTCAAGACCTAAGGACCACTCTTCAGCAGCAACAAGAGGATGTTACT
EST: gi|77582258|gb|DV220092.1|DV220092
EST:     TTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGATCA                         GAATTTCAAGACCTAAGGACCACTCTTCAGCAGCAACAAGAGGATGTTACT
genomic: TTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGATCAgtgagtgcca ... acataactagGAATTTCAAGACCTAAGGACCACTCTTCAGCAGCAACAAGAGGATGTTACT
EST: gi|77578306|gb|DV217933.1|DV217933
EST:     TTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGATCA                         GAATTTCAAGACCTAAGGACCACTCTTCAGCAGCAACAAGAGGATGTTACT
genomic: TTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGATCAgtgagtgcca ... acataactagGAATTTCAAGACCTAAGGACCACTCTTCAGCAGCAACAAGAGGATGTTACT
EST: gi|77584529|gb|DV221330.1|DV221330
EST:     TTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGATCA                         GAATTTCAAGACCTAAGGACCACTCTTCAGCAGCAACAAGAGGATGTTACT
genomic: TTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGATCAgtgagtgcca ... acataactagGAATTTCAAGACCTAAGGACCACTCTTCAGCAGCAACAAGAGGATGTTACT
EST: gi|77581182|gb|DV219518.1|DV219518
EST:     TTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGATCA                         GAATTTCAAGACCTAAGGACCACTCTTCAGCAGCAACAAGAGGATGTTACT
genomic: TTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGATCAgtgagtgcca ... acataactagGAATTTCAAGACCTAAGGACCACTCTTCAGCAGCAACAAGAGGATGTTACT
EST: gi|110417657|gb|EC983731.1|EC983731
EST:     TTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGATCA                         GAATTTCAAGACCTAAGGACCACTCTTCAGCAGCAACAAGAGGATGTTACT
genomic: TTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGATCAgtgagtgcca ... acataactagGAATTTCAAGACCTAAGGACCACTCTTCAGCAGCAACAAGAGGATGTTACT
EST: gi|34415518|gb|CF414272.1|CF414272
EST:     TTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGATCA                         GAATTTCAAGACCTAAGGANCACTCTTCAGCAGCAACAAGAGGATGTTACT
genomic: TTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGATCAgtgagtgcca ... acataactagGAATTTCAAGACCTAAGGACCACTCTTCAGCAGCAACAAGAGGATGTTACT
EST: gi|110405060|gb|EC970590.1|EC970590
EST:     TTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGATCA                         GAATTTCAAGACCTAAGGACCACTCTTCAGCAGCAACAAGAGGATGTTACT
genomic: TTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGATCAgtgagtgcca ... acataactagGAATTTCAAGACCTAAGGACCACTCTTCAGCAGCAACAAGAGGATGTTACT
EST: gi|34319828|gb|CF372582.1|CF372582
EST:     TTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGATCA                         GAATTTCAAGACCTAAGGACCACTCTTCAGCAGCAACAAGAGGATGTTACT
genomic: TTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGATCAgtgagtgcca ... acataactagGAATTTCAAGACCTAAGGACCACTCTTCAGCAGCAACAAGAGGATGTTACT
EST: gi|110360839|gb|EC924252.1|EC924252
EST:     TTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGATCA                         GAATTTCAAGACCTAAGGACCACTCTTCAGCAGCAACAAGAGGATGTTACT
genomic: TTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGATCAgtgagtgcca ... acataactagGAATTTCAAGACCTAAGGACCACTCTTCAGCAGCAACAAGAGGATGTTACT
EST: gi|71872568|gb|DT021623.1|DT021623
EST:     TTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGATCA                         GAATTTCAAGACCTAAGGACCACTCTTCAGCAGCAACAAGAGGATGTTACT
genomic: TTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGATCAgtgagtgcca ... acataactagGAATTTCAAGACCTAAGGACCACTCTTCAGCAGCAACAAGAGGATGTTACT
EST: gi|71890487|gb|DT039542.1|DT039542
EST:     TTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGATCA                         GAATTTCAAGACCTAAGGACCACTCTTCAGCAGCAACAAGAGGATGTTACT
genomic: TTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGATCAgtgagtgcca ... acataactagGAATTTCAAGACCTAAGGACCACTCTTCAGCAGCAACAAGAGGATGTTACT
EST: gi|77578619|gb|DV218101.1|DV218101
EST:     TTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGATCA                         GAATTTCAAGACCTAAGGACCACTCTTCAGCAGCAACAAGAGGATGTTACT
genomic: TTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGATCAgtgagtgcca ... acataactagGAATTTCAAGACCTAAGGACCACTCTTCAGCAGCAACAAGAGGATGTTACT
EST: gi|77580102|gb|DV218941.1|DV218941
EST:     TTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGATCA                         GAATTTCAAGACCTAAGGACCACTCTTCAGCAGCAACAAGAGGATGTTACT
genomic: TTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGATCAgtgagtgcca ... acataactagGAATTTCAAGACCTAAGGACCACTCTTCAGCAGCAACAAGAGGATGTTACT
EST: gi|110379884|gb|EC945106.1|EC945106
EST:     TTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGATCA                         GAATTTCAAGACCTAAGGACCACTCTTCAGCAGCAACAAGAGGATGTTACT
genomic: TTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGATCAgtgagtgcca ... acataactagGAATTTCAAGACCTAAGGACCACTCTTCAGCAGCAACAAGAGGATGTTACT
EST: gi|71868186|gb|DT017241.1|DT017241
EST:     TTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGATCA                         GAATTTCAAGACCTAAGGACCACTCTTCAGCAGCAACAAGAGGATGTTACT
genomic: TTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGATCAgtgagtgcca ... acataactagGAATTTCAAGACCTAAGGACCACTCTTCAGCAGCAACAAGAGGATGTTACT
EST: gi|71873162|gb|DT022217.1|DT022217
EST:     TTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGATCA                         GAATTTCAAGACCTAAGGACCACTCTTCAGCAGCAACAAGAGGATGTTACT
genomic: TTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGATCAgtgagtgcca ... acataactagGAATTTCAAGACCTAAGGACCACTCTTCAGCAGCAACAAGAGGATGTTACT
EST: gi|71874260|gb|DT023315.1|DT023315
EST:     TTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGATCA                         GAATTTCAAGACCTAAGGACCACTCTTCAGCAGCAACAAGAGGATGTTACT
genomic: TTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGATCAgtgagtgcca ... acataactagGAATTTCAAGACCTAAGGACCACTCTTCAGCAGCAACAAGAGGATGTTACT
EST: gi|110417988|gb|EC984094.1|EC984094
EST:     TTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGATCA                         GAATTTCAAGACCTAAGGACCACTCTTCAGCAGCAACAAGAGGATGTTACT
genomic: TTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGATCAgtgagtgcca ... acataactagGAATTTCAAGACCTAAGGACCACTCTTCAGCAGCAACAAGAGGATGTTACT
EST: gi|351016864|gb|FQ424291.1|FQ424291
EST:     TTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGATCA                         GAATTTCAAGACCTAAGGACCACTCTTCAGCAGCAACAAGAGGATGTTACT
genomic: TTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGATCAgtgagtgcca ... acataactagGAATTTCAAGACCTAAGGACCACTCTTCAGCAGCAACAAGAGGATGTTACT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGCTTTCTGAACTCAAAAAATCACTCAATGGTGAAGTGGAGCAACTTCGATCAgtgagtgccactcctttggtagtttctcttgtttgatgttttaaacattatgtaatttcattttatctaaacataactag

- - - - - - - - - - - - - - - - -  AGTGGA
- - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - GGAGCA