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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACACTCTTCCGTCTGAATATGATTCTCGAGTAAAGGCTATGGAAGTCGATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttggactgaacatatttcatagagggattccccagggttcttgttacatgccagattcttcgtagttgtttcttttgataaatgcacttttgtaacag

Basic information

species Vitis vinifera
transcript Vv05s0020g01180.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g01180.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os02g56000.2 (Oryza sativa), 5'ss of exon 4
GGACACTCTTCCGTCTGAATATGATTCTCGAGTAAAGGCTATGGAAGTCGATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaat-tttggactgaacatatt-tcatagagggattccccagggttcttgttaca----tgccagattcttcgtagttgtttcttttg--------ataaatgcacttttgtaacag------------------------------------------------------
 ||||| || || || ||||||||||| || || ||||| ||||| || ||||||||||| || || ||||||||||||||||| || || ||||| |||||   | |||    | || || |  | ||  |   |||    ||| |  |    |      ||  |  |   | | |||   ||| |||         |||| ||  | |  ||  | |                                                      
AGACACGCTACCTTCAGAATATGATTCACGGGTTAAGGCAATGGAGGTAGATGAAAAGCCTACAGAGGATTACAATGACATTGGTGGCCTTGAGAAACAGgtatttatttactttaaagatctaatgatgaaaacattagttaggatggtcaccattctgttgttatgtaagtagcagtaacttcatttccatatctcataagtgttcatcagttgctgtttgttcattgttatctgctctcttatgttctacttttatattgtctaatgcag

upper sequence: Vv05s0020g01180.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os06g07630.1 (Oryza sativa), 5'ss of exon 4
GGACACTCTTCCGTCTGAATATGATTCTCGAGTAAAGGCTATGGAAGTCGATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttggactgaacatatttcatagagggattccccagggttcttgttacat-----gccagattcttcgt---------agttgtttcttttgataaatgcact---tttgtaacag--------------------------------------------------------------
|||||| || || || || |||||||| ||||||||||| ||||| || |||||||| || || || || |||||||| ||||| ||||| || ||||||||  |||    | | ||  |      |  || | | |     ||  || |  | ||      |||  |  || |          ||   ||| | | | |  |||||       ||| |||                                                               
GGACACACTGCCATCAGAGTATGATTCACGAGTAAAGGCAATGGAGGTGGATGAAAAACCCACAGAGGACTACAATGATATTGGAGGTCTTGAAAAGCAGgtacattgcttaataaatgttgaaagttcagtgttcctttttggaactggaaatattgacaaccatctctttagggaataatagagcaatttgtatcgcttcatgcatcaagcatgttacatttccatccatcttttccttttcataatttatcattctttccatcctattttattgaatatag

upper sequence: Vv05s0020g01180.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G032505_T02 (Zea mays), 5'ss of exon 4
GGACACTCTTCCGTCTGAATATGATTCTCGAGTAAAGGCTATGGAAGTCGATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttggactgaacatatttcatagagggattccccagggttcttgttacatgccagattcttcgtagttgtttcttttgataaatgcacttttgtaacag
 || ||  | || || || || ||||| ||||| ||||| |||||||| ||||||||||| ||||||||||| ||||||||||||||||| || ||||||                                                                                                         
AGATACATTGCCATCAGAGTACGATTCACGAGTGAAGGCAATGGAAGTGGATGAAAAGCCCACTGAAGATTATAATGACATTGGGGGTCTTGAAAAGCAGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-----

upper sequence: Vv05s0020g01180.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G027282_T01 (Zea mays), 5'ss of exon 4
GGACACTCTTCCGTCTGAATATGATTCTCGAGTAAAGGCTATGGAAGTCGATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttggactgaacatatttcatagagggattccccagggttcttgttacatgccagattcttcgtagttgtttcttttgataaatgcacttttgtaacag
 || ||  | || || || ||||| || || || ||||| |||||||| ||||| || || ||||| ||||||||||||||||| || || ||||| ||||| | ||     |   |  |      || |  | |    |||   |  ||||        | | | | | |         |   || |       | |   ||||
AGATACATTGCCTTCAGAGTATGACTCACGGGTTAAGGCAATGGAAGTAGATGAGAAACCTACTGAGGATTACAATGACATTGGCGGACTTGAGAAACAGgtaatttgctttccagaactgggggtta-actgttatatcagcactactgttgtggatttgttacattgcaagcaagcagtaatatgatgtttggtataacacag

upper sequence: Vv05s0020g01180.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: EFJ15061 (Selaginella moellendorffii), 5'ss of exon 4
GGACACTCTTCCGTCTGAATATGATTCTCGAGTAAAGGCTATGGAAGTCGATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaat-tttggactgaacatatttcatagagggattccccagggttcttgttacatgccagattcttcgtagttgtttcttttgataaatgcacttttgtaacag
||| || |||||||| || ||||||||||| || |||||||||||||||||||| || || || || || |||| ||| ||||| || || || || || || | |  ||    |     | |||  |  |       |  | | ||  |||||                                                    
GGATACACTTCCGTCCGAGTATGATTCTCGTGTCAAGGCTATGGAAGTCGATGAGAAACCCACAGAGGACTACAGTGATATTGGAGGGCTTGACAAACAAgtaactgcttcatttctttgtgttttctttattctgatcaaaagcttggtgttag---------------------------------------------------

upper sequence: Vv05s0020g01180.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: EFJ37626 (Selaginella moellendorffii), 5'ss of exon 4
GGACACTCTTCCGTCTGAATATGATTCTCGAGTAAAGGCTATGGAAGTCGATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttggactgaacatatttcatagagggattccccagggttcttgttacatgccagattcttcgtagttgtttcttttgataaatgcacttttgtaacag
||| || |||||||| || ||||||||||| || |||||||||||||||||||| || || || || || |||| ||| ||||| || || || || || || | |  |           ||||| | | |    |   |    ||||  | | | ||  | || |                                       
GGATACACTTCCGTCCGAGTATGATTCTCGTGTCAAGGCTATGGAAGTCGATGAGAAACCCACAGAGGACTACAGTGATATTGGAGGGCTTGACAAACAAgtaactgctt---------catttctttgtg----ttttctttattctgatcaaaagcttggttttag-------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349808820|gb|FQ406670.1|FQ406670
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|349812353|gb|FQ406374.1|FQ406374
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|349808282|gb|FQ403469.1|FQ403469
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGTGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|349833057|gb|FQ416435.1|FQ416435
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|351026753|gb|FQ436406.1|FQ436406
EST:     ATGAAGAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|349812105|gb|FQ410902.1|FQ410902
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCCTGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|351026800|gb|FQ436453.1|FQ436453
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|349811569|gb|FQ409565.1|FQ409565
EST:     ATGAAAAGCCAACTGAAGATTACAATGACACTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACT
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACT
EST: gi|349828325|gb|FQ416278.1|FQ416278
EST:     ATGATAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|349818668|gb|FQ403502.1|FQ403502
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|110717892|gb|EE094156.1|EE094156
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|349815538|gb|FQ400694.1|FQ400694
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|349818769|gb|FQ409303.1|FQ409303
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGAACTCATAA-GAGCG
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGA-CTCACAAAGAGCG
EST: gi|349814178|gb|FQ414797.1|FQ414797
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAT                         ATCCGGGAACTCGTTGAGAGCA-TTGTT
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAG-GCAATTGTT
EST: gi|349809052|gb|FQ407501.1|FQ407501
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCCACAA-GAGCA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTC-ACAAAGAGCG
EST: gi|349810100|gb|FQ401546.1|FQ401546
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|351026518|gb|FQ428530.1|FQ428530
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|351037334|gb|FQ460533.1|FQ460533
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|351019753|gb|FQ439570.1|FQ439570
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|349815049|gb|FQ410272.1|FQ410272
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCCGCCCATGACTCAAAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|349814278|gb|FQ398704.1|FQ398704
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|351012252|gb|FQ426974.1|FQ426974
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGA-A-GCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|351019480|gb|FQ429615.1|FQ429615
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|349807880|gb|FQ402271.1|FQ402271
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|351033839|gb|FQ447877.1|FQ447877
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|349809200|gb|FQ398973.1|FQ398973
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|349811159|gb|FQ406103.1|FQ406103
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|349822547|gb|FQ412822.1|FQ412822
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|351043388|gb|FQ451440.1|FQ451440
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|351024771|gb|FQ430596.1|FQ430596
EST:     ATGAAAAGCCAACTGACGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|349819018|gb|FQ411713.1|FQ411713
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|351023074|gb|FQ430949.1|FQ430949
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|349818376|gb|FQ409151.1|FQ409151
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|351047310|gb|FQ451822.1|FQ451822
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|349820629|gb|FQ408458.1|FQ408458
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|351023695|gb|FQ448246.1|FQ448246
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|349818006|gb|FQ407995.1|FQ407995
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|351012427|gb|FQ427028.1|FQ427028
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGA-A-GCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|349814949|gb|FQ410172.1|FQ410172
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|349809023|gb|FQ407472.1|FQ407472
EST:     ATGAAAAACCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAACAC                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACCTC-CAAAAAGCG
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGAC-TCACAAAGAGCG
EST: gi|349817520|gb|FQ407310.1|FQ407310
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|110699646|gb|EE076827.1|EE076827
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|351037562|gb|FQ462545.1|FQ462545
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|351041131|gb|FQ444108.1|FQ444108
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|349816463|gb|FQ403838.1|FQ403838
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|351027526|gb|FQ446689.1|FQ446689
EST:     ATGATAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|349817057|gb|FQ399804.1|FQ399804
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|351040135|gb|FQ425221.1|FQ425221
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|349814705|gb|FQ409928.1|FQ409928
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|349815856|gb|FQ401012.1|FQ401012
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|351054548|gb|FQ452024.1|FQ452024
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|349816484|gb|FQ403859.1|FQ403859
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|352798843|gb|FQ478478.1|FQ478478
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|349822553|gb|FQ412828.1|FQ412828
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
EST: gi|349833224|gb|FQ416602.1|FQ416602
EST:     ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAG                         ATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA
genomic: ATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttg ... tttgtaacagATCCAGGAACTCGTTGAGGCAATTGTTCTGCCCATGACTCACAAAGAGCGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGACACTCTTCCGTCTGAATATGATTCTCGAGTAAAGGCTATGGAAGTCGATGAAAAGCCAACTGAAGATTACAATGACATTGGGGGTCTGGAGAAGCAGgtgaattttggactgaacatatttcatagagggattccccagggttcttgttacatgccagattcttcgtagttgtttcttttgataaatgcacttttgtaacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC