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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATTCGACATGTGTGATTCCCATAAGTGCATTCTTTGCCTCAAGTCTCTGgtaagcgcccaaatatagcagaattgatttgctgtttttgtttagtggaatttccttaattgtggaggtgttagttgttacatattacatctctatgtgt...

Basic information

species Vitis vinifera
transcript Vv05s0020g00740.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g00740.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os03g49570.1 (Oryza sativa), 5'ss of exon 4
ATATTCGACATGTGTGATTCCCATAAGTGCATTCTTTGCCTCAAGTCTCTGgtaagcgcccaaatatagcagaattgatttgctgtttttgtttagtggaatttccttaattgtggaggtgttagttgttacatatta---catctctatgtgt
|||| | |||||||||||||| || ||||| ||||| || |||||||| ||||||||    ||| ||||   |  |      |  | |||  ||       ||||||  ||        | |||  |  |  ||   |   |||  || ||   
ATATGCCACATGTGTGATTCCAATTAGTGCCTTCTTCGCGTCAAGTCTTTGgtaagc---taaacatagacaagatatggaaccatctttcatttcatttttttcctcgatcacttctttattatctcctgtatgagaaagcatggctttgaaa

upper sequence: Vv05s0020g00740.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT3G17430.1 (Arabidopsis thaliana), 5'ss of exon 5
ATATTCGACATGTGTGATTCCCATAAGTGCATTCTTTGCCTCAAGTCTCTGgtaagcgcc-----caaatatagcagaattgatttgctgtttttgtttagtggaatttccttaattgtggag------gtgttagttgttacatattacatctctatgtgt------------------------------
|||| | || |||||| | || ||||||||||||||||| ||||||||||||||||  ||      | | | |  | |  | ||||  || |   | ||| ||            ||  |||       || ||   |  ||  | || | || | |  |||                              
ATATGCAACCTGTGTGGTACCTATAAGTGCATTCTTTGCATCAAGTCTCTGgtaagttcctgttctatagacaataaacataatttattgatgc-gcttattgctggccatcaggttcaggaaaactctgtattttctagtatttcttgcttcccaaactgtctcttcactatttcttattctcttgtgcag

upper sequence: Vv05s0020g00740.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT1G48230.1 (Arabidopsis thaliana), 5'ss of exon 5
ATATTCGACATGTGTGATTCCCATAAGTGCATTCTTTGCCTCAAGTCTCTGgtaagc-----gcccaaatat------agcagaattgatttgctgtttttgtttagtggaatttccttaattgtggaggtgtta-gttgttacatattacatctctatgtgt-----------------------------------------------
||||  |||||||||| | || ||||| ||||||||||| || |||||||||||||      | ||| |||         || | | | |||   | |  | | |         |||| | |  || |  | | |  || | |  | | ||||  |    |                                                 
ATATGTGACATGTGTGGTGCCTATAAGCGCATTCTTTGCATCCAGTCTCTGgtaagtctttggtccatatacttgtgccacatattaggtttatagatgctctctgtcctggactcct-agtactgtaaatttcatattctgagttttgacattgcgtcatacctgctgtctgaattgtttcttgagtattcttttactcctttttacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351053340|gb|FQ459208.1|FQ459208
EST:     TAAGTGCATTCTTTGCCTCAAGTCTCTG                         GTTTGGTAACACTGCTTACTTGCACATATCTGTGGCCTTCATCCAGATGCT
genomic: TAAGTGCATTCTTTGCCTCAAGTCTCTGgtaagcgccc ... gttgttacagGTTTGGTAACACTGCTTACTTGCACATATCTGTGGCCTTCATCCAGATGCT
EST: gi|349820070|gb|FQ404792.1|FQ404792
EST:     TAAGTGCATTCTTTGCCTCAAGTCTCTG                         GTTTGGTAACACTGCTTACTTGCACATATCTGTGGCCTTCATCCAGATGCT
genomic: TAAGTGCATTCTTTGCCTCAAGTCTCTGgtaagcgccc ... gttgttacagGTTTGGTAACACTGCTTACTTGCACATATCTGTGGCCTTCATCCAGATGCT
EST: gi|349822247|gb|FQ412511.1|FQ412511
EST:     TAAGTGCATTCTTTGCCTCAAGTCTCTG                         GTTTGGTAACACTGCTTACTTGCACATATCTGTGGCCTTCATCCAGATGCT
genomic: TAAGTGCATTCTTTGCCTCAAGTCTCTGgtaagcgccc ... gttgttacagGTTTGGTAACACTGCTTACTTGCACATATCTGTGGCCTTCATCCAGATGCT
EST: gi|349812091|gb|FQ410888.1|FQ410888
EST:     TAAGTGCATTCTTTGCCTCAAGTCTCTG                         GTTTGGTAACACTGCTTACTTGCACATATCTGTGGCCTTCATCCAGATGCT
genomic: TAAGTGCATTCTTTGCCTCAAGTCTCTGgtaagcgccc ... gttgttacagGTTTGGTAACACTGCTTACTTGCACATATCTGTGGCCTTCATCCAGATGCT
EST: gi|351019691|gb|FQ439508.1|FQ439508
EST:     TAAGTGCATTCTTTGCCTCAAGTCTCTG                         GTTTGGTAACACTGCTTACTTGCACATATCTGTGGCCTTCATCCAGATGCT
genomic: TAAGTGCATTCTTTGCCTCAAGTCTCTGgtaagcgccc ... gttgttacagGTTTGGTAACACTGCTTACTTGCACATATCTGTGGCCTTCATCCAGATGCT
EST: gi|349808616|gb|FQ405760.1|FQ405760
EST:     TAAGTGCATTCTTTGCCTCAAGTCTCTG                         GTTTGGTAACACTGCTTACTTGCACATATCTGTGGCCTTCATCCAGATGCT
genomic: TAAGTGCATTCTTTGCCTCAAGTCTCTGgtaagcgccc ... gttgttacagGTTTGGTAACACTGCTTACTTGCACATATCTGTGGCCTTCATCCAGATGCT
EST: gi|349816192|gb|FQ403688.1|FQ403688
EST:     TAAGTGCATTCTTTGCCTCAAGTCTCTG                         GTTTGGTAACACTGCTTACTTGCACATATCTGTGGCCTTCATCCAGATGCT
genomic: TAAGTGCATTCTTTGCCTCAAGTCTCTGgtaagcgccc ... gttgttacagGTTTGGTAACACTGCTTACTTGCACATATCTGTGGCCTTCATCCAGATGCT
EST: gi|349811641|gb|FQ409638.1|FQ409638
EST:     TAAGTGCATTCTTTGCCTCAAGTCTCTG                         GTTTGGTAACACTGCTTACTTGCACATATCTGTGGCCTTCATCCAGATGCT
genomic: TAAGTGCATTCTTTGCCTCAAGTCTCTGgtaagcgccc ... gttgttacagGTTTGGTAACACTGCTTACTTGCACATATCTGTGGCCTTCATCCAGATGCT
EST: gi|349819593|gb|FQ413477.1|FQ413477
EST:     TAAGTGCATTCTTTGCCTCAAGTCTCTG                         GTTTGGTAACACTGCTTACTTGCACATATCTGTGGCCTTCATCCAGATGCT
genomic: TAAGTGCATTCTTTGCCTCAAGTCTCTGgtaagcgccc ... gttgttacagGTTTGGTAACACTGCTTACTTGCACATATCTGTGGCCTTCATCCAGATGCT
EST: gi|349813009|gb|FQ411249.1|FQ411249
EST:     TAAGTGCATTCTTTGCCTCAAGTCTCTG                         GTTTGGTAACACTGCTTACTTGCACATATCTGTGGCCTTCATCCAGATGCT
genomic: TAAGTGCATTCTTTGCCTCAAGTCTCTGgtaagcgccc ... gttgttacagGTTTGGTAACACTGCTTACTTGCACATATCTGTGGCCTTCATCCAGATGCT
EST: gi|351042064|gb|FQ456274.1|FQ456274
EST:     TAAGTGCATTCTTTGTCTCAAGTCTCTG                         GTTTGGTAACACTGCTTACTTGCACATATCTGTGGCCTTCATCCAGATGCT
genomic: TAAGTGCATTCTTTGCCTCAAGTCTCTGgtaagcgccc ... gttgttacagGTTTGGTAACACTGCTTACTTGCACATATCTGTGGCCTTCATCCAGATGCT
EST: gi|349816269|gb|FQ399379.1|FQ399379
EST:     TAAGTGCATTCTTTGCCTCAAGTCTCTG                         GTTTGGTAACACTGCTTACTTGCACATATCTGTGGCCTTCATCCAGATGCT
genomic: TAAGTGCATTCTTTGCCTCAAGTCTCTGgtaagcgccc ... gttgttacagGTTTGGTAACACTGCTTACTTGCACATATCTGTGGCCTTCATCCAGATGCT
EST: gi|349831143|gb|FQ420813.1|FQ420813
EST:     TAAGTGCATTCTTTGCCTCAAGTCTCTG                         GTTTGGTAACACTGCTTACTTGCACATATCTGTGGCCTTCATCCAGATGCT
genomic: TAAGTGCATTCTTTGCCTCAAGTCTCTGgtaagcgccc ... gttgttacagGTTTGGTAACACTGCTTACTTGCACATATCTGTGGCCTTCATCCAGATGCT
EST: gi|351034409|gb|FQ463222.1|FQ463222
EST:     TAAGTGCATTCTTTGTCTCAAGTCTCTG                         GTTTGGTAACACTGCTTACTTGCACATATCTGTGGCCTTCATCCAGATGCT
genomic: TAAGTGCATTCTTTGCCTCAAGTCTCTGgtaagcgccc ... gttgttacagGTTTGGTAACACTGCTTACTTGCACATATCTGTGGCCTTCATCCAGATGCT