Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTTTGTCTACAAGCACATTTATTGGGGAAACTGCATTTGCCATACTTATCGCCATCTTGGGCCTGGTTCTGTTTGCTCATTTAATCGGAAACATGCAGgtatttgggaagtcttgttcccttttgacttcttttaaattgtcagggactattttcttttcagaattccatgattgtatttctgttttctttattctag...

Basic information

species Vitis vinifera
transcript Vv04s0069g00790.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0069g00790.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA06G08170.1 (Glycine max), 5'ss of exon 7
GAGTTTGTCTACAAGCACATTTATTGGGGAAACTGCATTTGCCATACTTATCGCCATCTTGGGCCTGGTTCTGTTTGCTCATTTAATCGGAAACATGCAGgtatttgggaagtcttgttcccttttgacttcttttaaattgtcagggactattttcttttcagaattccatgattgtatttctgttttctttattctag--------
||||||| |||||||||||||  || |||||||||||||||| ||||| || || ||  |||| |||||||||||||| || ||||| || |||||||||||| || |||  | | |  ||||    |||      |||||   |  ||  || || ||| ||  |||   |  |  |  || |        |  ||  |        
GAGTTTGACTACAAGCACATTCGTTTGGGAAACTGCATTTGCAATACTCATAGCTATTCTGGGTCTGGTTCTGTTTGCCCACTTAATTGGTAACATGCAGgtaattaggat-tttcggaccctcgaaactc-----aaatttcaaaaga--atgttatttacaacattaatttctgttgcttttaggggagatcctccgggacataag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110428540|gb|EC995015.1|EC995015
EST:     TCGCCATCTTGGGCCTGGTTCTGTTTGCTCATTTAATCGGAAACATGCAG                         ACCTACTTGCAATCTATCACTGTGAGGCTTGAGGAGTGGAGGCTCAAGCGA
genomic: TCGCCATCTTGGGCCTGGTTCTGTTTGCTCATTTAATCGGAAACATGCAGgtatttggga ... tttattgcagACCTACTTGCAATCTATCACTGTGAGGCTTGAGGAGTGGAGGCTCAAGCGA