Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATCAGCATTCTTTACACAACCAAATTGGCTGCCTTTTCTCTGCTAAAATTGGCGAAGGAACTGACATGCAGCCATTAGATGGTTCTTCACCAATAAAGgttgatactaatgcaattatttcaatggatatttcatttgaacattagaagcttgtttttgatacttttgattgccctttag

Basic information

species Vitis vinifera
transcript Vv04s0044g01480.t01
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351054641|gb|FQ456838.1|FQ456838
EST:     TTGGCGAAGGAACTGACATGCAGCCATTAGATGGTTCTTCACCAATAAAG                         GTGCATGTCAGCGCCATTGAAAACCCCGAGGAAGCATCATTCTTTGAATCA
genomic: TTGGCGAAGGAACTGACATGCAGCCATTAGATGGTTCTTCACCAATAAAGgttgatacta ... tgccctttagGTGCATGTCAGCGCCATTGAAAACCCCGAGGAAGCATCATTCTTTGAATCA
EST: gi|351038015|gb|FQ460757.1|FQ460757
EST:     TTGGCGAAGGAACTGACATGCAGTCATTAGATGGTTCTTCACCAATAAAG                         GTGCATGTCAGCGCCATTGAAAACCCCGAGGAAGCATCATTCTTTGAATCA
genomic: TTGGCGAAGGAACTGACATGCAGCCATTAGATGGTTCTTCACCAATAAAGgttgatacta ... tgccctttagGTGCATGTCAGCGCCATTGAAAACCCCGAGGAAGCATCATTCTTTGAATCA
EST: gi|351042217|gb|FQ442684.1|FQ442684
EST:     TTGGCGAAGGAACTGACATGCAGCCATTAGATGGTTCTTCACCAATAAAG                         GTGCATGTCAGCGCCATTGAAAACCCCGAGGAAGCATCATTCTTTGAATCA
genomic: TTGGCGAAGGAACTGACATGCAGCCATTAGATGGTTCTTCACCAATAAAGgttgatacta ... tgccctttagGTGCATGTCAGCGCCATTGAAAACCCCGAGGAAGCATCATTCTTTGAATCA
EST: gi|349828516|gb|FQ417258.1|FQ417258
EST:     TTGGCGAAGGAACTGACATGCAGCCATTAGATGGTTCTTCACCAATAAAG                         GTGCATGTCAGCGCCATTGAAAACCCCGAGGAAGCATCATTCTTTGAATCA
genomic: TTGGCGAAGGAACTGACATGCAGCCATTAGATGGTTCTTCACCAATAAAGgttgatacta ... tgccctttagGTGCATGTCAGCGCCATTGAAAACCCCGAGGAAGCATCATTCTTTGAATCA
EST: gi|351057082|gb|FQ450789.1|FQ450789
EST:     TTGGCGAAGGAACTGACATGCAGCCATTAGATGGTTCTTCACCAATAAAG                         GTGCATGTCAGCGCCATTGAAAACCCCGAGGAAGCATCATTCTTTGAATCA
genomic: TTGGCGAAGGAACTGACATGCAGCCATTAGATGGTTCTTCACCAATAAAGgttgatacta ... tgccctttagGTGCATGTCAGCGCCATTGAAAACCCCGAGGAAGCATCATTCTTTGAATCA
EST: gi|351056977|gb|FQ443604.1|FQ443604
EST:     TTGGCGAAGGAACTGACATGCAGCCATTAGATGGTTCTTCACCAATAAAG                         GTGCATGTCAGCGCCATTGAAAACCCCGAGGAAGCATCATTCTTTGAATCA
genomic: TTGGCGAAGGAACTGACATGCAGCCATTAGATGGTTCTTCACCAATAAAGgttgatacta ... tgccctttagGTGCATGTCAGCGCCATTGAAAACCCCGAGGAAGCATCATTCTTTGAATCA
EST: gi|351039598|gb|FQ461465.1|FQ461465
EST:     TTGGCGAAGGAACTGACATGCAGCCATTAGATGGTTCTTCACCAATAAAG                         GTGCATGTCAGCGCCATTGAAAACCCCGAGGAAGCATCATTCTTTGAATCA
genomic: TTGGCGAAGGAACTGACATGCAGCCATTAGATGGTTCTTCACCAATAAAGgttgatacta ... tgccctttagGTGCATGTCAGCGCCATTGAAAACCCCGAGGAAGCATCATTCTTTGAATCA
EST: gi|349825261|gb|FQ417982.1|FQ417982
EST:     TTGGCGAAGGAACTGACATGCAGCCATTAGATGGTTCTTCACCAATAAAG                         GTGCATGTCAGCGCCATTGAAAACCCCGAGGAAGCATCATTCTTTGAATCA
genomic: TTGGCGAAGGAACTGACATGCAGCCATTAGATGGTTCTTCACCAATAAAGgttgatacta ... tgccctttagGTGCATGTCAGCGCCATTGAAAACCCCGAGGAAGCATCATTCTTTGAATCA
EST: gi|352794444|gb|FQ481676.1|FQ481676
EST:     TTGGCGAAGGAACTGACATGCAGCCATTAGATGGTTCTTCACCAATAAAG                         GTGCATGTCAGCGCCATTGAAAACCCCGAGGAAGCATCATTCTTTGAATCA
genomic: TTGGCGAAGGAACTGACATGCAGCCATTAGATGGTTCTTCACCAATAAAGgttgatacta ... tgccctttagGTGCATGTCAGCGCCATTGAAAACCCCGAGGAAGCATCATTCTTTGAATCA
EST: gi|122689385|gb|EC938204.1|EC938204
EST:     TTGGCGAAGGAACTGATATGCAGCCATTAGATGGTTCTTCACCAATAAAG                         GTGCATGTCAGCGCCATTGAAAACCCTGAGGAAGCATCATTCTTTGAATCA
genomic: TTGGCGAAGGAACTGACATGCAGCCATTAGATGGTTCTTCACCAATAAAGgttgatacta ... tgccctttagGTGCATGTCAGCGCCATTGAAAACCCCGAGGAAGCATCATTCTTTGAATCA
EST: gi|122688865|gb|EC927133.1|EC927133
EST:     TTGGCGAAGGAACTGATATGCAGCCATTAGATGGTTCTTCACCAATAAAG                         GTGCATGTCAGCGCCATTGAAAACCCTGAGGAAGCATCATTCTTTGAATCA
genomic: TTGGCGAAGGAACTGACATGCAGCCATTAGATGGTTCTTCACCAATAAAGgttgatacta ... tgccctttagGTGCATGTCAGCGCCATTGAAAACCCCGAGGAAGCATCATTCTTTGAATCA
EST: gi|351038675|gb|FQ464541.1|FQ464541
EST:     TTGGCGAAGGAACTGACATGCAGCCATTAGATGGTTCTTCACCAATAAAG                         GTGCATGTCAGCGCCATTGAAAACCCCGAGGAAGCATCATTCTTTGAATCA
genomic: TTGGCGAAGGAACTGACATGCAGCCATTAGATGGTTCTTCACCAATAAAGgttgatacta ... tgccctttagGTGCATGTCAGCGCCATTGAAAACCCCGAGGAAGCATCATTCTTTGAATCA
EST: gi|352793784|gb|FQ481938.1|FQ481938
EST:     TTGGCGAAGGAACTGACATGCAGCCATTAGATGGTTCTTCACCAATAAAG                         GTGCATGTCAGCGCCATTGAAAACCCCGAGGAAGCATCATTCTTTGAATCA
genomic: TTGGCGAAGGAACTGACATGCAGCCATTAGATGGTTCTTCACCAATAAAGgttgatacta ... tgccctttagGTGCATGTCAGCGCCATTGAAAACCCCGAGGAAGCATCATTCTTTGAATCA
EST: gi|352786467|gb|FQ479076.1|FQ479076
EST:     TTGGCGAAGGAACTGACATGCAGCCCTTAGATGGTTCTTCACCAATAAAG                         GTGCATGTCCGCGCCATTGAAAACCCTGAGGAAGCATCTTTCTTTGAATCA
genomic: TTGGCGAAGGAACTGACATGCAGCCATTAGATGGTTCTTCACCAATAAAGgttgatacta ... tgccctttagGTGCATGTCAGCGCCATTGAAAACCCCGAGGAAGCATCATTCTTTGAATCA
EST: gi|161709570|gb|FC061400.1|FC061400
EST:     TGGCGAAGGAACTGATATGCAACCAATAATATGGTTCTTCACCAATAAAG                         GTGCATGTCAGCGCCATTGAAAACCCTGAGGAAGCATCATTCTTTGAATCA
genomic: TGGCGAAGGAACTGACATGCAGCC-ATTAGATGGTTCTTCACCAATAAAGgttgatacta ... tgccctttagGTGCATGTCAGCGCCATTGAAAACCCCGAGGAAGCATCATTCTTTGAATCA
EST: gi|351017111|gb|FQ424538.1|FQ424538
EST:     TTGGCGAAGGAACTGACATGCAGCCATTAGATGGTTCTTCACCAATAAAG                         GTGCATGTCAGCGCCATTGAAAACCCCGAGGAAGCATCATTCTTTGAATCA
genomic: TTGGCGAAGGAACTGACATGCAGCCATTAGATGGTTCTTCACCAATAAAGgttgatacta ... tgccctttagGTGCATGTCAGCGCCATTGAAAACCCCGAGGAAGCATCATTCTTTGAATCA
EST: gi|351042941|gb|FQ451235.1|FQ451235
EST:     TTGGCGAAGGAACTGACATGCAGCCATTAGATGGTTCTTCACCAATAAAG                         GTGCATGTCAGCGCCATTGAAAACCCCGAGGAAGCATCATTCTTTGAATCA
genomic: TTGGCGAAGGAACTGACATGCAGCCATTAGATGGTTCTTCACCAATAAAGgttgatacta ... tgccctttagGTGCATGTCAGCGCCATTGAAAACCCCGAGGAAGCATCATTCTTTGAATCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGATCAGCATTCTTTACACAACCAAATTGGCTGCCTTTTCTCTGCTAAAATTGGCGAAGGAACTGACATGCAGCCATTAGATGGTTCTTCACCAATAAAGgttgatactaatgcaattatttcaatggatatttcatttgaacattagaagcttgtttttgatacttttgattgccctttag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA