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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAACTTGAGGCCCTTCTTGGTTCTGTAAACAACAATGATAGTAGCCACATAGTTCATGTTCCTGCTGGTCCAAATGCTCTTTCTGACGTGCTTATAAGgtaactggtcaactttcattttttttttttttcattctcgcatgacattgtagaaaattatgacagtgtaatttcatcttatatattcttttgttttgtttcctcatggcag

Basic information

species Vitis vinifera
transcript Vv04s0023g03620.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0023g03620.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: LOC_Os03g13970.1 (Oryza sativa), 5'ss of exon 5
AGAAACTTGAGGCCCTTCTTGGTTCTGTAAACAACAATGATAGTAGCCACATAGTTCATGTTCCTGCTGGTCCAAATGCTCTTTCTGACGTGCTTATAAGgtaactggtcaactttcattttttttttttttcattctcgcatgacattgtagaaaattatgacagtgtaatttcatcttatatattcttttgttttgtttcctcatggcag
||||||| || || ||  |   | |||| ||||  | |||||| |||||||| |||||||| ||| | |||  |||||| ||||| || |||||||||||||||    | |  | ||| ||| ||     |  |   |    |   | ||||     |  |||||   |||| ||    | |  |                           
AGAAACTGGAAGCGCTAATCTCTGCTGTGAACAGTAGTGATAGCAGCCACATCGTTCATGTCCCTCCCGGTGAAAATGCCCTTTCCGATGTGCTTATAAGgtaa----taatgtatcaatttgttcgggctctaggttgttgttttaatgtatttc-tgctgacaaattaatatccctcttttcacag------------------------

upper sequence: Vv04s0023g03620.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA11G08290.1 (Glycine max), 5'ss of exon 5
AGAAACTTGAGGCCCTTCTTGGTTCTGTAAACAACAATGATAGTAGCCACATAGTTCATGTTCCTGCTGGTCCAAATGCTCTTTCTGACGTGCTTATAAGgtaactgg--tcaactttcattttttttttttttcattctcgcatgac-attgtagaaaattatgacagtgtaatttcatcttatatattctttt------------gttttgtttcctcatggcag
|||| || || || || ||||   |||| ||||| |||||||  |||||||| |||||||||||  |||||||||||||||||||||| || ||||||||||   |||  | || ||    || |||||||||||  |||  | |    ||  |       | |   | | ||| ||||   ||| | |   | |            || ||||| | |  ||||||
AGAAGCTGGAAGCACTCCTTGCAGCTGTTAACAATAATGATACCAGCCACATTGTTCATGTTCCATCTGGTCCAAATGCTCTTTCTGATGTACTTATAAGgtttgtgggcttaatttcatcttcttttttttttctctctttcttttttatcctttgtttctctcttaatataagttcaatctatgtttctctcttaagatattcatgtgttgttgctttgtggcag

upper sequence: Vv04s0023g03620.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA01G36990.1 (Glycine max), 5'ss of exon 5
AGAAACTTGAGGCCCTTCTTGGTTCTGTAAACAACAATGATAGTAGCCACATAGTTCATGTTCCTGCTGGTCCAAATGCTCTTTCTGACGTGCTTATAAGgtaactggtca-actttcat--tttttttttttttcattctcgcatgacattgtagaaaattatga-cagtgtaa----tttcatcttatat--attcttttgttttgtttcctcatggcag
|||| || || || || || |   |||| ||||| |||||||  |||||||| |||||||||||  ||||||| ||||| |||||||| || ||||||||||   ||| |  | ||||||  | | |||||| ||  || || | ||    | |   ||  || |  || |||||    ||| |||| || |  ||  |  ||   |||| | |  ||||||
AGAAGCTGGAAGCACTCCTCGCAGCTGTTAACAATAATGATACCAGCCACATTGTTCATGTTCCATCTGGTCCTAATGCCCTTTCTGATGTACTTATAAGgttcgtgggctcaatttcatcgtgtgttttttcttttttgtcccttgtttctctcttaagataagttcaatgtaacttttttgatctaattttgatattcatgcgatgttgctttctggcag

upper sequence: Vv04s0023g03620.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA02G05250.2 (Glycine max), 5'ss of exon 5
AGAAACTTGAGGCCCTTCTTGGTTCTGTAAACAACAATGATAGTAGCCACATAGTTCATGTTCCTGCTGGTCCAAATGCTCTTTCTGACGTGCTTATAAGgtaactggtcaactttcattttttttttttttcattctcgcatgacattgt-agaaaattatgacagtgtaatttcatcttatatattcttttgttttgtttcctcatggcag
||||  | ||||| || |||    |||| ||||| |||||||  |||||||| |||||||||||  |||||||||| ||||||||||| || || ||||||| | ||||    |||| || | ||   || |  |     |     |||   ||   | ||  | ||   || ||  | || ||  ||    | ||   | |           
AGAAGTTGGAGGCACTCCTTTCAGCTGTTAACAATAATGATACCAGCCACATTGTTCATGTTCCATCTGGTCCAAACGCTCTTTCTGATGTACTAATAAGgttagtggttttatttctttatcttcccttgtactcactactcagtattcccagttgagtaatatag---aagttatttttttaggtttccctattgcttcta----------

upper sequence: Vv04s0023g03620.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA16G23590.1 (Glycine max), 5'ss of exon 5
AGAAACTTGAGGCCCTTCTTGGTTCTGTAAACAACAATGATAGTAGCCACATAGTTCATGTTCCTGCTGGTCCAAATGCTCTTTCTGACGTGCTTATAAGgtaactggtcaactttcattttttttttttttcattctcgcatgacattgtagaaaattatgacagtgtaatttcatcttatatattcttttgttttgtttcctcatggcag
||||  | ||||| || |||    |||| ||||| |||||||  |||||||| |||||||||||  |||||||||| || |||||||| || || ||||||| | ||||    |||| || | ||  ||| |  ||    |    |||| |   |   | ||| | || |||| |   || | || |       ||  |||  |        
AGAAGTTGGAGGCACTCCTTTCAGCTGTTAACAATAATGATACCAGCCACATTGTTCATGTTCCATCTGGTCCAAACGCCCTTTCTGATGTACTAATAAGgttagtggttttatttctttatcttcctttgtacttactactcagcattttccca---tttga-aatg-aattcccagttgtgtaatagagaagttatttttttt-------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110724206|gb|EE099841.1|EE099841
EST:     ATAGTTCATGTTCCTGCTGGTCCAAATGCTCTTTCTGACGTGCTTATAAG                         TACACCCATCTTCACAGGGGATGGGGGAAAGTGGAAGTGGTTTTGCACCAG
genomic: ATAGTTCATGTTCCTGCTGGTCCAAATGCTCTTTCTGACGTGCTTATAAGgtaactggtc ... ctcatggcagTACACCCATCTTCACAGGGGATGGGG-AAGGTGGAAGTGGTTTTGCAGCAG
EST: gi|110718273|gb|EE094914.1|EE094914
EST:     ATAGTTCATGTTCCTGCTGGTCCAAATGCTCTTTCTGACGTGCTTATAAG                         TACACCCATCTTCACAGGGGATGGGGAAAGGTTGGAAGTGGTTTTGCAGCA
genomic: ATAGTTCATGTTCCTGCTGGTCCAAATGCTCTTTCTGACGTGCTTATAAGgtaactggtc ... ctcatggcagTACACCCATCTTCACAGGGGATGGGGAA-GGT-GGAAGTGGTTTTGCAGCA
EST: gi|110425434|gb|EC991819.1|EC991819
EST:     ATAGTTCATGTTCCTGCTGGTCCAAATGCTCTTTCTGACGTGCTTATAAG                         TACACCCATCTTCACAGGGGATGGGGAAGGTGGAAGTGGTTTTGCAGCAGC
genomic: ATAGTTCATGTTCCTGCTGGTCCAAATGCTCTTTCTGACGTGCTTATAAGgtaactggtc ... ctcatggcagTACACCCATCTTCACAGGGGATGGGGAAGGTGGAAGTGGTTTTGCAGCAGC
EST: gi|110721698|gb|EE098992.1|EE098992
EST:     ATAGTTCATGTTCCTGCTGGTCCAAATGCTCTTTCTGATGTGCTTATAAG                         TACACCCATCTTCACAGGGGATGGGGAAGGTGGAAGTGGTTTTGCAGCAGC
genomic: ATAGTTCATGTTCCTGCTGGTCCAAATGCTCTTTCTGACGTGCTTATAAGgtaactggtc ... ctcatggcagTACACCCATCTTCACAGGGGATGGGGAAGGTGGAAGTGGTTTTGCAGCAGC
EST: gi|110723511|gb|EE100909.1|EE100909
EST:     ATAGTCCATGTTCCTGCTGGTCCAAATGCTCTTTCTGACGTGCTTATAAG                         TACACCCATCTTCACAGGGGATGGGGAAGGTGGAAGTGGTTTTGCAGCAGC
genomic: ATAGTTCATGTTCCTGCTGGTCCAAATGCTCTTTCTGACGTGCTTATAAGgtaactggtc ... ctcatggcagTACACCCATCTTCACAGGGGATGGGGAAGGTGGAAGTGGTTTTGCAGCAGC
EST: gi|110684657|gb|EE062188.1|EE062188
EST:     ATAGTTCATGTTCCTGCTGGTCCAAATGCTCTTTCTGACGTGCTTATAAG                         TACACCCATCTTCACAGGGGATGGGGAAGGTGGAAGTGGTTTTGCAGCAGC
genomic: ATAGTTCATGTTCCTGCTGGTCCAAATGCTCTTTCTGACGTGCTTATAAGgtaactggtc ... ctcatggcagTACACCCATCTTCACAGGGGATGGGGAAGGTGGAAGTGGTTTTGCAGCAGC
EST: gi|110693944|gb|EE070616.1|EE070616
EST:     CTTTCTGACGTGCTTATAAG                         TACACCCATCTTCACAGGGGATGGGGAAGGTGGAAGTGGTTTTGCAGCAGC
genomic: CTTTCTGACGTGCTTATAAGgtaactggtc ... ctcatggcagTACACCCATCTTCACAGGGGATGGGGAAGGTGGAAGTGGTTTTGCAGCAGC
EST: gi|110702751|gb|EE079006.1|EE079006
EST:     ATAGTTCATGTTCCTGCTGGTCCAAATGCTCTTTCTGATGTGCTTATAAG                         TACACCCATCTTCACAGGGGATGGGGAAAGTGGAAGTGGTTTTGCAGCAGC
genomic: ATAGTTCATGTTCCTGCTGGTCCAAATGCTCTTTCTGACGTGCTTATAAGgtaactggtc ... ctcatggcagTACACCCATCTTCACAGGGGATGGGGAAGGTGGAAGTGGTTTTGCAGCAGC
EST: gi|110384926|gb|EC949397.1|EC949397
EST:     ATAGTTCATGTTCCTGCTGGTCCAAATGCTCTTTCTGACGTGCTTATAAG                         TACACCCATCTTCACAGGGGATGGGGAAGGTGGAAGTGGTTTTGCAGCAGC
genomic: ATAGTTCATGTTCCTGCTGGTCCAAATGCTCTTTCTGACGTGCTTATAAGgtaactggtc ... ctcatggcagTACACCCATCTTCACAGGGGATGGGGAAGGTGGAAGTGGTTTTGCAGCAGC
EST: gi|110687737|gb|EE065489.1|EE065489
EST:     ATAGTTCATGTTCCTGCTGGTCCAAATGCTCTTTCTGACGTGCTTATAAG                         TACACCCATCTTCACAGGGGATGGGGAAGGTGGAAGTGGTTTTGCAGCAGC
genomic: ATAGTTCATGTTCCTGCTGGTCCAAATGCTCTTTCTGACGTGCTTATAAGgtaactggtc ... ctcatggcagTACACCCATCTTCACAGGGGATGGGGAAGGTGGAAGTGGTTTTGCAGCAGC
EST: gi|110689406|gb|EE065602.1|EE065602
EST:     ATAGTTCATGTTCCTGCTGGTCCAAATGCTCTTTCTGACGTGCTTATAAG                         TACACCCATCTTCACAGGGGATGGGGAAGGTGGAAGTGGTTTTGCAGCAGC
genomic: ATAGTTCATGTTCCTGCTGGTCCAAATGCTCTTTCTGACGTGCTTATAAGgtaactggtc ... ctcatggcagTACACCCATCTTCACAGGGGATGGGGAAGGTGGAAGTGGTTTTGCAGCAGC
EST: gi|110730475|gb|EE107599.1|EE107599
EST:     ATAGTTCATGTTCCTGCTGGTCCAAATGCTCTTTCTGACGTGCTTATAAG                         TACACCCATCTTCACAGGGGATGGGGGAAGGTGGAATTGNTTTTGCANCAN
genomic: ATAGTTCATGTTCCTGCTGGTCCAAATGCTCTTTCTGACGTGCTTATAAGgtaactggtc ... ctcatggcagTACACCCATCTTCACAGGGGATGGGG-AAGGTGGAAGTGGTTTTGCAGCAG