Sequence
atgc intronic sequence ATGC exonic sequenceTCCAGCAGCAGGGGAGGAGGATATTTGTTGTTGGTGATCTTAATATTGCTCCTGCTGCTATAGATCGCTGTGATGCTGGACCAGATTTTGAGAAGAATGAgtaagttgctggcaaatttctatgtagtgcctttaccaccctcaaccctaacttcccccaaccatacacctacacaaatgtgtctatgtttggagttgtt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0023g03440.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G103458_T01 (Zea mays), 5'ss of exon 5
TCCAGCAGCAGGGGAGGAGGATATTTGTTGTTGGTGATCTTAATATTGCTCCTGCTGCTATAGATCGCTGTGATGCTGGACCAGATTTTGAGAAGAATGAgtaagt-tgctggcaaatttctatgtagtgcctt--taccaccctcaaccctaacttcccccaaccatacacctacacaaatgtgtcta-tgtttggagttgtt
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TATTGGCTCTTGGAAAGAGAGTTTTTGTTGTTGGTGATTTGAATATTGCTCCTGCTTCTATAGACAGGTGTGACGCGGCACCTGGCTTCGAGAAGCAAATgtaagccttcttttagtattatttgttttgctatggttccaattttaaag-tatctgtaatcaacaatacatgtttgttgtcattttttctaattaaag-----
upper sequence: Vv04s0023g03440.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA02G05430.1 (Glycine max), 5'ss of exon 5
TCCAGCAGCAGGGGAGGAGGATATTTGTTGTTGGTGATCTTAATATTGCTCCTGCTGCTATAGATCGCTGTGATGCTGGACCAGATTTTGAGAAGAATGAgtaag-ttgctggcaaatttctatgtagtgcctttaccaccctcaaccctaacttcccccaaccatac--acctacacaaatgtgtctatgtttggagttgtt
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TCCTGCATCAAGGAAGGAGAATATTTGTTGTTGGTGATCTCAATATTGCACCATTTGCAATTGATCGATGTGATGCCGGACCTGATTTTGAAAATAACGAgtgagcttacagccagaattctatgaagtatttttaatgtct--aatctaatatgctgataattatcttaacttttttgcctgaattcatgtgtag-------
upper sequence: Vv04s0023g03440.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT4G36050.2 (Arabidopsis thaliana), 5'ss of exon 5
TCCAGCAGCAGGGGAGGAGGATATTTGTTGTTGGTGATCTTAATATTGCTCCTGCTGCTATAGATCGCTGTGATGCTGGACCAGATTTTGAGAAGAATGAgtaagttgctgg----caaatttctatgtagtgcctttaccaccctcaaccctaacttcccccaaccatacacctacacaaatgtgtctatgtttggagttgtt
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TTCTGCGTCAAGGAAGGAGGGTATTTGTTGTTGGGGATCTCAACATTGCTCCTTTTGCTATGGATCGATGTGAAGCTGGGCCTGATTTTGAGAAAAACGAgtatgtaactgattctcatgctctgtttaaatcgctttgctttacttaataat--tttttctctactagatatct-cattttcatgtcattaaaaaaatgcag-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161712080|gb|FC061452.1|FC061452EST: CCTGCTGCTATAGATCGCTGTGATGCTGGACCAGATTTTGAGAAGAATGA GTTCAGGAGATGGTTTATATCTATGCTAGTGGAATGTGGAGGCCCTTTCTT
genomic: CCTGCTGCTATAGATCGCTGTGATGCTGGACCAGATTTTGAGAAGAATGAgtaagttgct ... cttcttgtagGTTCAGGAGATGGTTTAGATCTATGCTAGTGGAATGTGGAGGCCCTTTCTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCCAGCAGCAGGGGAGGAGGATATTTGTTGTTGGTGATCTTAATATTGCTCCTGCTGCTATAGATCGCTGTGATGCTGGACCAGATTTTGAGAAGAATGAgtaagttgctggcaaatttctatgtagtgcctttaccaccctcaaccctaacttcccccaaccatacacctacacaaatgtgtctatgtttggagttgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caccctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttccccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acacaaa