1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AATTTTCTTTTCAAGTCAACCAAAGAGGACTCGCCTTTGAAGGCCACGGATTTTGGTCTATCAGACTTCATAAAGCCTGgtaagtgaaatttcgccttctcaatatatggactttgaaatccatattttcatgggtttctgttgttcaaacaattacaacatatgcttctagcttttgaattggaaaaactgaatatgaataaacacag
species | Vitis vinifera |
transcript | Vv04s0023g03420.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CTCGCCTTTGAAGGCCACGGATTTTGGCCTATCAGACTTCATAAAGCCTG GGAAGAAGTTTCAAGATATTGTTGGTAGTGCCTACTATGTTGCTCCTGAAGEST: gi|161714014|gb|FC064089.1|FC064089
genomic: CTCGCCTTTGAAGGCCACGGATTTTGGTCTATCAGACTTCATAAAGCCTGgtaagtgaaa ... ataaacacagGGAAGAAGTTTCAAGATATTGTTGGTAGTGCCTACTATGTTGCTCCTGAAG
EST: CTCGCCTTTGAAGGCCACGGATTTTGGTCTATCAGACTTCATAAAGCCTG GGAAGAAGTTTCAAGATATTGTTGGTAGTGCCTACTATGTTGCTCCTGAAGEST: gi|71864824|gb|DT013879.1|DT013879
genomic: CTCGCCTTTGAAGGCCACGGATTTTGGTCTATCAGACTTCATAAAGCCTGgtaagtgaaa ... ataaacacagGGAAGAAGTTTCAAGATATTGTTGGTAGTGCCTACTATGTTGCTCCTGAAG
EST: CTCGCCTTTGAAGGCCACGGATTTTGGTCTATCAGACTTCATAAAGCCTG GGAAGAAGTTTCAAGATATTGTTGGTAGTGCCTACTATGTTGCTCCTGAAG
genomic: CTCGCCTTTGAAGGCCACGGATTTTGGTCTATCAGACTTCATAAAGCCTGgtaagtgaaa ... ataaacacagGGAAGAAGTTTCAAGATATTGTTGGTAGTGCCTACTATGTTGCTCCTGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATTTTCTTTTCAAGTCAACCAAAGAGGACTCGCCTTTGAAGGCCACGGATTTTGGTCTATCAGACTTCATAAAGCCTGgtaagtgaaatttcgccttctcaatatatggactttgaaatccatattttcatgggtttctgttgttcaaacaattacaacatatgcttctagcttttgaattggaaaaactgaatatgaataaacacag
- - - - - - - - - - - - - - - - - - TTGAAG