Sequence
atgc intronic sequence ATGC exonic sequenceGTATATCTAATACTTGATGAGTTCATTCTTGCTGGAGAGCTCCAGGAAACAAGCAAGAAGgtgtgtgtttttctgttgtgtgtgctctgttgttttggttttctttttttacttttttattttttattttttttagtctgtctttttgtttttgtttttt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0023g03340.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GRMZM2G052713_T01 (Zea mays), 5'ss of exon 5
GTATATCTAATACTTGATGAGTTCATTCTTGCTGGAGAGCTCCAGGAAACAAGCAAGAAGgtgtgtgtttttctgttgtgtgtgctctgttgttttggttttctttttttacttttttattttttattttttttagtctgtctttttgtttttgtttttt-
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GTTTACTTGATATTGGATGAGTTCATTCTTGCTGGAGAGCTTCAAGAAACAAGCAAAAGGgtattgcttttcccatcata-ataaaaatttattgtcatctttaaagttatttgtatgaaagagcctctagccgagttggttaggtggtctgagcagcact
upper sequence: Vv04s0023g03340.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA17G37730.1 (Glycine max), 5'ss of exon 5
GTATATCTAATACTTGATGAGTTCATTCTTGCTGGAGAGCTCCAGGAAACAAGCAAGAAGgtgtgtgtttttctg----ttgtgtgtgctctgt-tgttttggttttctttttttacttttttattttttattttttttagtctgtctttttgtttttgtttttt
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-TCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGGtatgcattcttttggagttactaagcactttgcatgctgctacttgctagtgtaagatttaagctgtgtagttacactatgat-tccaggcgtagttgcct---
upper sequence: Vv04s0023g03340.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA14G40430.2 (Glycine max), 5'ss of exon 5
GTATATCTAATACTTGATGAGTTCATTCTTGCTGGAGAGCTCCAGGAAACAAGCAAGAAGgtgtgtgtttttctgttgtgtgtgctctgttgttttggttttctttttttacttttttattttttattttttttagt----ctgtctttttgtttttgtttttt
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GTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACAAGCAAGAAGgtaagcattctttt----tgagttactaagcactttacgtgttgctacttgctagtctatgatttaagttgtgtagttacactacgattccaggcatagttgcc
upper sequence: Vv04s0023g03340.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT1G47830.1 (Arabidopsis thaliana), 5'ss of exon 5
GTATATCTAATACTTGATGAGTTCATTCTTGCTGGAGAGCTCCAGGAAACAAGCAAGAAGgtgtgtg-tttttctgttgtg-tgtgctctgttgttttggttttctttttttactttt--ttattttttattttttttagt-ctgtctttttgtttttgtttttt-
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GTGTACTTGATACTCGATGAGTTCATTCTTGCTGGGGAGCTCCAAGAAACAAGCAAAAGGgtgtgaaatttttgtttcaagcttctctctttcacttaaatgtatcacacatgctcttgctcaagtgctaaacttttaaatgttggggacttgttttaattcgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110389725|gb|EC954585.1|EC954585EST: TACTTGATGAATTCATTCTTGCTGGAGAGCTCCAGGAAACAAGCAAGAAG GCAATAATAGAGAGAATGGGGGAGTTGGAAAAGCAAGAATGAGAATGGGGG
genomic: TACTTGATGAGTTCATTCTTGCTGGAGAGCTCCAGGAAACAAGCAAGAAGgtgtgtgttt ... aaatttgcagGCAATAATAGAGAGAATGGGGGAGTTGGAAAAGCAAGAATGAGAATGGGGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTATATCTAATACTTGATGAGTTCATTCTTGCTGGAGAGCTCCAGGAAACAAGCAAGAAGgtgtgtgtttttctgttgtgtgtgctctgttgttttggttttctttttttacttttttattttttattttttttagtctgtctttttgtttttgtttttt
- - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG