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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCAACTCTAGCTACTTTTGTAGCTGTATATGCACTTTTTGGACCAACTTTTCCAGGAAGTTACGACAAAGATAGAGGTGTTTACACTCTGTTCTACCCGgtatatacaagaagatatttaagcaaaattttgttcatttttctttgaaaatttgttttcttccatgctgagatttctttggtgtctgtattttgtag

Basic information

species Vitis vinifera
transcript Vv04s0023g02970.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0023g02970.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA01G37380.1 (Glycine max), 5'ss of exon 5
ATCAACTCTAGCTACTTTTGTAGCTGTATATGCACTTTTTGGACCAACTTTTCCAGGAAGTTACGACAAAGATAGAGGTGTTTACACTCTGTTCTACCCGgtatatacaagaagatatttaagcaaaattttgttcatttttctttgaaaatttgttttcttccatgctgagatttctttggtgtctgtattttgtag
||||||| ||||||||||||| |||||||||||||| ||||| || || | ||| |||| ||  ||||| ||||||||  ||||||| || ||||| |||||| |||      |||||  ||       | | ||  |  || |||   |     |    |||||   |   | | ||||    | ||   ||   ||
ATCAACTTTAGCTACTTTTGTTGCTGTATATGCACTGTTTGGGCCCACATATCCTGGAATTTTTGACAAGGATAGAGGCATTTACACCCTATTCTATCCGgtacatattttg-gatatc-aaatgcctctctattattgctttttttttaccccctacaattccacattactaatactttctgctttgctcttcacag

upper sequence: Vv04s0023g02970.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA11G07910.1 (Glycine max), 5'ss of exon 5
ATCAACTCTAGCTACTTTTGTAGCTGTATATGCACTTTTTGGACCAACTTTTCCAGGAAGTTACGACAAAGATAGAGGTGTTTACACTCTGTTCTACCCGgtatatacaagaagatatttaagcaaaattttgttcatttttctttgaaaatttgttttcttccatgctgagatttctttggtgtctgtattttgtag------------
||||||| ||||||| ||||| |||||||||||||| ||||| || || | ||| |||| ||  ||||| |||||| |  ||||||| || ||||| |||||| ||||     |||||  ||     || |  |     ||| |||      |  |    |||||   |   | | ||||    | | |||||| | |            
ATCAACTTTAGCTACATTTGTTGCTGTATATGCACTGTTTGGGCCCACATATCCTGGAATTTTTGACAAGGATAGACGCATTTACACCCTATTCTATCCGgtacatactttg-gatatcaaatgctgatctattattgcttttttttcttcctcctacaattccacattactaatactttctgctttatatttt-tggtttgttctttag

upper sequence: Vv04s0023g02970.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT3G51130.1 (Arabidopsis thaliana), 5'ss of exon 5
ATCAACTCTAGCTACTTTTGTAGCTGTATATGCACTTTTTGGACCAACTTTTCCAGGAAGTTACGACAAAGATAGAGGTGTTTACACTCTGTTCTACCCGgtatatacaaga-agatatttaagcaaaattttgt-tcatttttctttgaaaatttgttttcttccatgctgagatttctttggtgtctgtattttgtag
||||||||| || || ||||| ||||| |||||||||||||||||||| ||||| || | ||| || ||||| |||||  ||||  ||||||||||||||||    |  | | ||| |  |   || | | || |  ||||  | ||||||  |||||| | | | ||| | | || | |||      || |        
ATCAACTCTGGCAACGTTTGTGGCTGTTTATGCACTTTTTGGACCAACCTTTCCTGGGATTTATGATAAAGAAAGAGGGATTTATTCTCTGTTCTACCCGgtgagcaagaaatagacagatggtcacattgttttaccattaatgtttgaa--tttgttctat-caatgttta-atctttttaactattgcag-------

upper sequence: Vv04s0023g02970.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: PP1S58_197V6.2 (Physcomitrella patens), 5'ss of exon 5
ATCAACTCTAGCTACTTTTGTAGCTGTATATGCACTTTTTGGACCAACTTTTCCAGGAAGTTACGACAAAGATAGAGGTGTTTACACTCTGTTCTACCCGgtatata----caagaagatatt--taagcaaaattttgttcatttttctttgaaaatttgttttcttccatgctgagatttctttggtgtctgtattttgtag
|   | |  ||| || |||||||| || |||||||||||||||||||| |||||||| |  | | |||   |  |  | ||||||||  | || ||||| |||  ||    |  | |  |  |  |    ||   ||| | | ||||| ||| ||  | | || | ||  ||     | ||| | || | | ||          
AAACATTACAGCCACGTTTGTAGCAGTTTATGCACTTTTTGGACCAACCTTTCCAGGTACATTCAACATGAAGCGGTGCGTTTACACATTATTTTACCCTgtaagtagtctcttgcactttctatttgttaacggtttttccttttttatttaaatttatcttatattgtatatgttggtttgtgtgatatttgaggaaa----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161713938|gb|FC062598.1|FC062598
EST:     TTCCAGGAAGTTACGACAAAGATAGAGGTGTTTACACTCTGTTCTACCCG                         GGTTTATCTTTCGCTTTTCCAATTCCCACCCAGTATACAGATTGCTGCCAT
genomic: TTCCAGGAAGTTACGACAAAGATAGAGGTGTTTACACTCTGTTCTACCCGgtatatacaa ... tattttgtagGGTTTATCTTTCGCTTTTCCAATTCCCACCCAGTATACAGATTGCTGCCAT
EST: gi|30133248|gb|CB918587.1|CB918587
EST:     TTCCAGGAAGTTACGACAAAGATAGAGGTGTTTACACTCTGTTCTACCCG                         GGTTTATCTTTCGCTTTTCCAATTCCCACCCAGTATACAGATTGCTGCCAT
genomic: TTCCAGGAAGTTACGACAAAGATAGAGGTGTTTACACTCTGTTCTACCCGgtatatacaa ... tattttgtagGGTTTATCTTTCGCTTTTCCAATTCCCACCCAGTATACAGATTGCTGCCAT
EST: gi|110698037|gb|EE075591.1|EE075591
EST:     TTCCAGGAAGTTACGACAAAGATAGAGGTGTTTACACTCTGTTCTACCCG                         GTTTTATCTTTCGCTTTTCCAATTCCCACCCAGTATACAGATTGCTGCCAT
genomic: TTCCAGGAAGTTACGACAAAGATAGAGGTGTTTACACTCTGTTCTACCCGgtatatacaa ... tattttgtagGGTTTATCTTTCGCTTTTCCAATTCCCACCCAGTATACAGATTGCTGCCAT
EST: gi|110718343|gb|EE095064.1|EE095064
EST:     TTCCAGGAAGTTACGACAAAGATAGAGGTGTTTACACTCTGTTCTACCCG                         GGTTTATCTTTCGCTTTTCCAATTCCCACCCAGTATACAGATTGCTGCCAT
genomic: TTCCAGGAAGTTACGACAAAGATAGAGGTGTTTACACTCTGTTCTACCCGgtatatacaa ... tattttgtagGGTTTATCTTTCGCTTTTCCAATTCCCACCCAGTATACAGATTGCTGCCAT
EST: gi|294963767|gb|GW836617.1|GW836617
EST:     TTCCAGGAAGTTACGACAAAGATAGAGGTGTTTACACTCTGTTCTACCCG                         GGTTTATCTTTCGCTTTTCCAATTCCCACCCAGTATACAGATTGCTGCCAT
genomic: TTCCAGGAAGTTACGACAAAGATAGAGGTGTTTACACTCTGTTCTACCCGgtatatacaa ... tattttgtagGGTTTATCTTTCGCTTTTCCAATTCCCACCCAGTATACAGATTGCTGCCAT
EST: gi|110730101|gb|EE106793.1|EE106793
EST:     TTCCAGGAAGTTACGACAAAGATAGAGGTGTTTACACTCTGTTCTACCCG                         GGTTTATCTTTCGCTTTTCCAATTCCCACCCAGTATACAGATTGCTGCCAT
genomic: TTCCAGGAAGTTACGACAAAGATAGAGGTGTTTACACTCTGTTCTACCCGgtatatacaa ... tattttgtagGGTTTATCTTTCGCTTTTCCAATTCCCACCCAGTATACAGATTGCTGCCAT
EST: gi|27586273|gb|CB008968.1|CB008968
EST:     TTCCAGGAAGTTACGACAAAGATAGAGGTGTTTACACTCTGTTCTACCCG                         GGTTTATCTTTCGCTTTTCCAATTCCCACCCAGTATACAGATTGCTGCCAT
genomic: TTCCAGGAAGTTACGACAAAGATAGAGGTGTTTACACTCTGTTCTACCCGgtatatacaa ... tattttgtagGGTTTATCTTTCGCTTTTCCAATTCCCACCCAGTATACAGATTGCTGCCAT