Sequence
atgc intronic sequence ATGC exonic sequenceCTTTCTGAAGCCTTTGAAGGAAATTTTCCAACGTATAGTTCTTGGATTTTTGTTCTGGCAAGCAAAGCAACCAGCTCGAATTGAATCTGTCTTAAAGAGTgtatgtcatttgctccctaattaaaaacttgggctttcttttaaagcttaatttggaattcaagaagactaagggttatctctgagtcagcagtattata...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0023g02010.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA16G25200.2 (Glycine max), 5'ss of exon 5
CTTTCTGAAGCCTTTGAAGGAAATTTTCCAACGTATAGTTCTTGGATTTTTGTTCTGGCAAGCAAAGCAACCAGCTCGAATTGAATCTGTCTTAAAGAGTgtatgtcatttgctccctaattaaaaacttgggctttcttttaaagcttaatttggaattcaagaagactaagggttatctctgagtcagcagtattata---
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TCTCCTAAAGCCATTGAAGGAAGTTTTCCAGCGTGTAGTTCTTGGATTTTTATTCTGGCAGGCAAAGCAACCAGCTCGGGTTCTGTCAGTCCTAAAAAGTgtatgttacttgctatcttctcattaaagcatattggtgttatgaaaatggtaggattttttatc---tcaagaatcacattcatggaggcttttatatatgg
upper sequence: Vv04s0023g02010.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA02G06170.1 (Glycine max), 5'ss of exon 2
CTTTCTGAAGCCTTTGAAGGAAATTTTCCAACGTATAGTTCTTGGATTTTTGTTCTGGCAAGCAAAGCAACCAGCTCGAATTGAATCTGTCTTAAAGAGTgtatgtcatttgct---ccctaattaaaaac---ttgggctttcttttaaagcttaatttggaattcaagaagactaagggttatctctgagtcagcagtattata
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TGTCCTAAAACCTTTGAAGGAAGTTTTCCAGCGTGTGGTTCTTGGATTTTTATTCTGGCAGGCAAAGCAACCAGCTCGGATTCTGTCAGTTCTAAAAAGTgtatgttacttgctatcttctcattaaaagtatatttgtattacccaaatggctggatttttaatctta--agaataagaatcatatccatggaggc--ttttg--
upper sequence: Vv04s0023g02010.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT4G36530.1 (Arabidopsis thaliana), 5'ss of exon 6
CTTTCTGAAGCCTTTGAAGGAAATTTTCCAACGTATAGTTCTTGGATTTTTGTTCTGGCAAGCAAAGCAACCAGCTCGAATTGAATCTGTCTTAAAGAGTgtatgtcatttgctccctaattaaaaacttgggctttcttttaaagcttaatttggaattcaagaagactaagggttatctctgagtcagcagtattata
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TATAGTTAAGCCGCTAAAAGAGATTTTCCAACGTGTGGTTCTTGGGTTCTTGTTCTGGCAAGCCAAGCAACCTTCTCGAATCGAATCTGTCTTAAAGAGTgta-atgtcttattaacttctgtcagacttcatctcaagtatg----ttactttgtactt------------agttttttcttgtttttgcag-------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|352795116|gb|FQ477226.1|FQ477226EST: TGTTCTGGCAAGCAAAGCAACCAGCTCGAATTGAATCTGTCTTAAAGAGT GTGTATATAAATGCCTCCAATGTGGATGACTATCTTGTGGAATCAATAACA
genomic: TGTTCTGGCAAGCAAAGCAACCAGCTCGAATTGAATCTGTCTTAAAGAGTgtatgtcatt ... cccaatatagGTGTATATAAATGCCTCCAATGTGGATGACTATCTTGTGGAATCAATAACA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTTTCTGAAGCCTTTGAAGGAAATTTTCCAACGTATAGTTCTTGGATTTTTGTTCTGGCAAGCAAAGCAACCAGCTCGAATTGAATCTGTCTTAAAGAGTgtatgtcatttgctccctaattaaaaacttgggctttcttttaaagcttaatttggaattcaagaagactaagggttatctctgagtcagcagtattata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aattaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaaga