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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGTGGAGTATAAAGGAACAATTAGAGAAAAGCCGTCCAGTGAGGAAGAAGCACGCGAATTTGTCAAAGgtttgcttaatgacttccctgttatctcttccatttacaagaattagttggactcaatgtcacatcctcatggatttcag

Basic information

species Vitis vinifera
transcript Vv04s0023g01800.t01
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110421805|gb|EC988106.1|EC988106
EST:     AATTAGAGAAAAGCCGTCCAGTGAGGAAGAAGCACGCGAATTTGTCAAAG                         GCTATTCTGGCAGTCATGGAGGAGTTGTAGGATCTGTACTTGTAACCAACC
genomic: AATTAGAGAAAAGCCGTCCAGTGAGGAAGAAGCACGCGAATTTGTCAAAGgtttgcttaa ... tggatttcagGCTATTCTGGCAGTCATGGAGGAGTTGTAGGATCTGTACTTGTAACCAACC
EST: gi|30320677|gb|CD003939.1|CD003939
EST:     GAAAAGCCGTCCAGTGAGGAAGAAGCACGCAAATTTGTCAAAG                         GCTATTCTGGCAGTCATGGAGGAGTTGTAGGATCTGTACTTGTAACCAACC
genomic: GAAAAGCCGTCCAGTGAGGAAGAAGCACGCGAATTTGTCAAAGgtttgcttaa ... tggatttcagGCTATTCTGGCAGTCATGGAGGAGTTGTAGGATCTGTACTTGTAACCAACC
EST: gi|18459211|gb|BM437489.1|BM437489
EST:     GAAAAGCCGTCCAGTGAGGAAGAAGCACGCAAATTTGTCAAAG                         GCTATTCTGGCAGTCATGGAGGAGTTGTAGGATCTGTACTTGTAACCAACC
genomic: GAAAAGCCGTCCAGTGAGGAAGAAGCACGCGAATTTGTCAAAGgtttgcttaa ... tggatttcagGCTATTCTGGCAGTCATGGAGGAGTTGTAGGATCTGTACTTGTAACCAACC
EST: gi|30321195|gb|CD004457.1|CD004457
EST:     GAAAAGCCGTCCAGTGAGGAAGAAGCACGCAAATTTGTCAAAG                         GCTATTCTGGCAGTCATGGAGGAGTTGTAGGATCTGTACTTGTAACCAACC
genomic: GAAAAGCCGTCCAGTGAGGAAGAAGCACGCGAATTTGTCAAAGgtttgcttaa ... tggatttcagGCTATTCTGGCAGTCATGGAGGAGTTGTAGGATCTGTACTTGTAACCAACC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGGTGGAGTATAAAGGAACAATTAGAGAAAAGCCGTCCAGTGAGGAAGAAGCACGCGAATTTGTCAAAGgtttgcttaatgacttccctgttatctcttccatttacaagaattagttggactcaatgtcacatcctcatggatttcag

- - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - -  AGAAGC