Sequence
atgc intronic sequence ATGC exonic sequenceCATGAGGTAGCGCATGAAGGTGAGACTGGGAAAGTGTCCAGAGCTGATTTTCATGATCGACTCGGGAGGACAGTCCTTATAATGAGGCCAGGGATGCAGgtttgtgcttgaagtttagtttctgtccttaggtgttgatctcttgattacttagctttgtgtattaacctgttactttctttcctttgttacttcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0023g01720.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA16G25460.1 (Glycine max), 5'ss of exon 4
CATGAGGTAGCGCATGAAGGTGAGACTGGGAAAGTGTCCAGAGCTGATTTTCATGATCGACTCGGGAGGACAGTCCTTATAATGAGGCCAGGGATGCAGgtttgtgcttgaagtttagtttctgtc---cttaggtgttgatctcttgattacttagctttgtgtattaacctgttactttctttcctttgttacttcag
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GCTGAAATAGCACATGAGGGTGAGACAGGCAAAGTCTCCAGAGCTAACTTTCATGATCGACATGGGAGGGCTGTGCTTATTATGAGGCCAGGGATGCAGgtttgaactagaa-tgtactttcaataaggcttctctgtacatgactggttaacttaaatctgt---ctaatctgtttccttttgttag------------
upper sequence: Vv04s0023g01720.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA02G06380.1 (Glycine max), 5'ss of exon 4
CATGAGGTAGCGCATGAAGGTGAGACTGGGAAAGTGTCCAGAGCTGATTTTCATGATCGACTCGGGAGGACAGTCCTTATAATGAGGCCAGGGATGCAGgtttgtgcttgaagtttagtttctgt---ccttaggtgttgatctcttgattacttagctttgtgtattaacct-----gttactttctttcctttgttacttcag------------------
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GCTGAAATAGCACATGAGGGTGAAACAGGCAAAGTCTCCAGAGCTAACTTCCATGATCGACTTGGGAGGACTGTGCTTATTATGAGGCCAGGGATGCAGgtttggacttaggatgtactttcaataaggcttctctgtacatgactggttaacttttttttttatggtcagccaaagagatgactggttaacttaatctgtctaatctgtttccttttgttagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110374991|gb|EC939941.1|EC939941EST: TTCATGATCGACTCGGGAGGACAGTCCTTATAATGAGGCCAGGGATGCAG AATACAACATCAGCAGAAAATAATATCCGCCATCTAGTCTATCTCATAGAG
genomic: TTCATGATCGACTCGGGAGGACAGTCCTTATAATGAGGCCAGGGATGCAGgtttgtgctt ... gttacttcagAATACAACATCAGCAGAAAATAATATCCGCCATCTAGTCTATCTCATAGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CATGAGGTAGCGCATGAAGGTGAGACTGGGAAAGTGTCCAGAGCTGATTTTCATGATCGACTCGGGAGGACAGTCCTTATAATGAGGCCAGGGATGCAGgtttgtgcttgaagtttagtttctgtccttaggtgttgatctcttgattacttagctttgtgtattaacctgttactttctttcctttgttacttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA