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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGATCCAAATAATGACCCAAATATTTCGGGAGACCCATACAAGACATTGTTTGTAGCTAGGCTTgtgagtattaatgattacactctttatcatttttctattttctatccattattaaactcactgatttattttattttttatattttttttacag

Basic information

species Vitis vinifera
transcript Vv04s0023g01580.t01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0023g01580.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA11G07200.2 (Glycine max), 5'ss of exon 5
ATGATCCAAATAATGACCCAAATATTTCGGGAGACCCATACAAGACATTGTTTGTAGCTAGGCTTgtgagtattaatgattacactctttatcatttttctattttctatccattattaaactcactgatttattttattttttatattttttttacag
|||||||| |||||||||||||| | |||||||| |||||||||||||||||||| ||||  || || |||         |  | | |  |   |  |  || |  | |   ||||    |      |   ||| || ||| ||    | || | ||||
ATGATCCACATAATGACCCAAATGTGTCGGGAGATCCATACAAGACATTGTTTGTGGCTAAACTCgtaagt---------tgtattttccaatgtagtattagtgac-acttattagcgtatagttagtcatatctt-tttgttgctgtcttctaacag

upper sequence: Vv04s0023g01580.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA01G38120.1 (Glycine max), 5'ss of exon 5
ATGATCCAAATAATGACCCAAATATTTCGGGAGACCCATACAAGACATTGTTTGTAGCTAGGCTTgtgagtattaatgattacactctttatcatttttctattttctatccattattaaactcactgatttattttattttttatattttttttacag
|||||||| |||||||||||||| | |||||||| |||||||||||||||||||| ||||  || || |||  ||    ||   |  | ||  |||  | |      |    |  ||  |  |  |     ||| ||||| ||   || || |  ||||
ATGATCCACATAATGACCCAAATGTGTCGGGAGATCCATACAAGACATTGTTTGTGGCTAAACTCgtaagttgta----ttttccaatgtagtattagtgtgacactttagtagcatatagttagcca---tatcttattgttgccatcttcta-acag

upper sequence: Vv04s0023g01580.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA02G06420.1 (Glycine max), 5'ss of exon 6
ATGATCCAAATAATGACCCAAATATTTCGGGAGACCCATACAAGACATTGTTTGTAGCTAGGCTTgtgagtattaatgattacactctttatcatttttctattttctatccattattaaactcactgatttattttattttttatattttttttacag
|||||||| | |||||||||||| | || ||||| |||||||||||||||||| |||| || ||||| |||  || ||  ||     | ||  |||| | |     || || | |   | | |   || | ||| | |||  |  ||| || |  ||||
ATGATCCACACAATGACCCAAATGTATCAGGAGATCCATACAAGACATTGTTTATAGCCAGACTTgtaagttatattgtctaa----tgtagtatttgtttggcacct-tcgagttgcatattggttgttgtatctcattggtgttatcttctg-acag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|56409078|gb|CX017330.1|CX017330
EST:     ACCCAAATATTTCGGGAGACCCATACAAGACATTGTTTGTAGCTAGGCTT                         AACTATGAGACAACTGAGAGCAGAATCAAAAGGGAGTTTGAGGCTTATGGG
genomic: ACCCAAATATTTCGGGAGACCCATACAAGACATTGTTTGTAGCTAGGCTTgtgagtatta ... ttttttacagAACTATGAGACAACTGAGAGCAGAATCAAAAGGGAGTTTGAGGCTTATGGG