1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
ATCTTGAAGGCAAGACTGATAGCAAGATTCGAGCTCTAGAAGTAGTAGAAGAACTCAGAACGAAAAGAGCAGACAAGCAGgtaattgttgtttgttgagacattaaattggcatgtcattgttgatatattagtgttgtttagttatagtgccattttttgataagcagtctgtacttccttttttccattccatgattaagattttgaatctcatatgtgttgcaaaccttttcttatgatag
species | Vitis vinifera |
transcript | Vv04s0023g00800.t01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GAGCTCTAGAAGTAGTAGAAGAACTCAGAACGAAAAGAGCAGACAAGCAG TCTATGCTTCTTCTGGATGCCTTCAACAAGGATAGAGCGTCTTTACCCCACEST: gi|33403422|gb|CF209049.1|CF209049
genomic: GAGCTCTAGAAGTAGTAGAAGAACTCAGAACGAAAAGAGCAGACAAGCAGgtaattgttg ... cttatgatagTCTATGCTTCTTCTGGATGCCTTCAACAAGGATAGAGCGTCTTTACCCCAA
EST: GAGCTCTAGAAGTAGTAGAAGAACTCAGAACGAAAAGAGCAGACAAGCAG TCTATGCTTCTTCTGGATGCCTTCAACAAGGATAGAGCGTCTTTACCCCAAEST: gi|110731820|gb|EE106576.1|EE106576
genomic: GAGCTCTAGAAGTAGTAGAAGAACTCAGAACGAAAAGAGCAGACAAGCAGgtaattgttg ... cttatgatagTCTATGCTTCTTCTGGATGCCTTCAACAAGGATAGAGCGTCTTTACCCCAA
EST: GAGCTCTAGAAGTAGTAGAAGAACTCAGAACGAAAAGAGCAGACAAGCAG TCTATGCTTCTTCTGGATGCCTTCAACAAGGATAGAGCGTCTTTACCCCAAEST: gi|110698321|gb|EE075705.1|EE075705
genomic: GAGCTCTAGAAGTAGTAGAAGAACTCAGAACGAAAAGAGCAGACAAGCAGgtaattgttg ... cttatgatagTCTATGCTTCTTCTGGATGCCTTCAACAAGGATAGAGCGTCTTTACCCCAA
EST: GAGCTCTAGAAGTAGTAGAAGAACTCAGAACGAAAAGAGCAGACAAGCAG TCTATGCTTCTTCTGGATGCCTTCAACAAGGATAGAGCGTCTTTACCCCAA
genomic: GAGCTCTAGAAGTAGTAGAAGAACTCAGAACGAAAAGAGCAGACAAGCAGgtaattgttg ... cttatgatagTCTATGCTTCTTCTGGATGCCTTCAACAAGGATAGAGCGTCTTTACCCCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCTTGAAGGCAAGACTGATAGCAAGATTCGAGCTCTAGAAGTAGTAGAAGAACTCAGAACGAAAAGAGCAGACAAGCAGgtaattgttgtttgttgagacattaaattggcatgtcattgttgatatattagtgttgtttagttatagtgccattttttgataagcagtctgtacttccttttttccattccatgattaagattttgaatctcatatgtgttgcaaaccttttcttatgatag
- - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG