Sequence
atgc intronic sequence ATGC exonic sequenceGTTGGGGACAAAGTACAGAAAGGAAAAGTCTTGTGCATCATTGAGGCCATGAAATTGATGAATGAGATAGAAgtaaggcttttcttttcttctcttctccatctaattatgtgctgcaacagtccacatttaaagttttacttctatacaagataatctttgctttattcaa...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0023g00760.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA09G38440.1 (Glycine max), 5'ss of exon 5
GTTGGGGACAAAGTACAGAAAGGAAAAGTCTTGTGCATCATTGAGGCCATGAAATTGATGAATGAGATAGAAgtaaggct---tttcttttcttctcttctccatctaattatgtgctgcaacagtccacatttaaagttttacttctatacaagataatc-tttgctttattcaa
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GTTGGAGACAAAGTAAAGAAGGGGCAAGTTGTATGCATCATTGAGGCAATGAAATTGATGAATGAAATAGAAgtaagttcaaaggttttatattgatttttattggtaactgttgattaaaacagtggattctacatgtcatgcctttatgtggtgcacttatttgttgcat----
upper sequence: Vv04s0023g00760.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA18G47880.1 (Glycine max), 5'ss of exon 5
GTTGGGGACAAAGTACAGAAAGGAAAAGTCTTGTGCATCATTGAGGCCATGAAATTGATGAATGAGATAGAAgtaaggct---tttcttttcttctcttctccatctaattatgtgctgcaacagtccacatttaaagttttacttctatacaagataatctttgctttattcaa
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GTTGGAGACAAAGTAAAGAAGGGGCAAGTTGTATGCATCATTGAGGCAATGAAATTGATGAATGAAATTGAAgtaagttcaaaggttttatatttatttttattggtaactgttgattaaaacaggggattctacatgttatacctttatgtgggcacttatttgatgcatc---
upper sequence: Vv04s0023g00760.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: EDO98131 (Chlamydomonas reinhardtii), 5'ss of exon 5
----------------------------GTTGGGGACAAAGTACAGAAAGGAAAAGTCTTGTGCATCATTGAGGCCATGAAATTGATGAATGAGATAGAAgtaaggcttttcttttcttctcttctccatctaattatgtgctgcaacagtccacatttaaagttttacttctatacaagataatctttgctttattcaa
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TGCCCCCGGTGAGCCGGAGTTCGCCAAGGTTGGCGACAAGGTGAAGAAGGGCCAGACCGTGTGCATCATTGAGGCCATGAAGCTGATGAACGAGATCGAGgtgagatgagcggtgttggtgtggcgaggcggtggtgggcactgcaatcgtgggtggctagggtgggtgggtggaaggaggcgatggggacaccgcaggaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110386077|gb|EC950650.1|EC950650EST: GAAAAGTCTTGTGCATCATTGAGGCCATGAAATTGATGAATGAGATAGAA GCTGATCAATCAGGAACAATAGTCGAGATCCTTGCAGATGACGGCAAGTCT
genomic: GAAAAGTCTTGTGCATCATTGAGGCCATGAAATTGATGAATGAGATAGAAgtaaggcttt ... ttttccccagGCTGATCAATCAGGAACAATAGTCGAGATCCTTGCAGATGACGGCAAGTCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTGGGGACAAAGTACAGAAAGGAAAAGTCTTGTGCATCATTGAGGCCATGAAATTGATGAATGAGATAGAAgtaaggcttttcttttcttctcttctccatctaattatgtgctgcaacagtccacatttaaagttttacttctatacaagataatctttgctttattcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagataa