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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATGCATTTGAATCTGGTGACCGGAAAGGCACAATAATTGACAGTGGCACAACCTTGGCTTATTTCCCACAGGAGGTTTATGTTCCACTAATAGAAAAGgtaggtggcatctttcaaagttctttattagaatcaaagcatgaagtttgtattctgacttcttaccatatatatgctttctttattag

Basic information

species Vitis vinifera
transcript Vv04s0023g00730.t01
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110385581|gb|EC950120.1|EC950120
EST:     CAACCTTGGCTTATTTCCCACAGGAGGTTTATGTTCCACTAATAGAAAAG                         ATTTTGTCTCAGCAGCCTGATTTGAGACTACACACTGTTGAACAAGCATTC
genomic: CAACCTTGGCTTATTTCCCACAGGAGGTTTATGTTCCACTAATAGAAAAGgtaggtggca ... tctttattagATTTTGTCTCAGCAGCCTGATTTGAGACTACACACTGTTGAACAAGCATTC
EST: gi|110393757|gb|EC959222.1|EC959222
EST:     CAACCTTGGCTTATTTCCCACAGGAGGTTTATGTTCCACTAATAGAAAAG                         ATTTTGTCTCAGCAGCCTGATTTGAGACTACACACTGTTGAACAAGCATTC
genomic: CAACCTTGGCTTATTTCCCACAGGAGGTTTATGTTCCACTAATAGAAAAGgtaggtggca ... tctttattagATTTTGTCTCAGCAGCCTGATTTGAGACTACACACTGTTGAACAAGCATTC
EST: gi|110389046|gb|EC953857.1|EC953857
EST:     CAACCTTGGCTTATTTCCCACAGGAGGTTTATGTTCCACTAATAGAAAAG                         ATTTTGTCTCAGCAGCCTGATTTGAGACTACACACTGTTGAACAAGCATTC
genomic: CAACCTTGGCTTATTTCCCACAGGAGGTTTATGTTCCACTAATAGAAAAGgtaggtggca ... tctttattagATTTTGTCTCAGCAGCCTGATTTGAGACTACACACTGTTGAACAAGCATTC