Sequence
atgc intronic sequence ATGC exonic sequenceGTGAGGAAGCTTTAAAAAAACTTGAGGAAAGAGGAGTGGTCATACGTTTCGTAATTGGTCGGAGgttgtcccacacacttaaatcttcattttgtatttgtatggcacttcctttcttttttcctccttataaaactagcttagtttatctttgcattacaagcattatgattatggtggattttatagaaagttttatcttaacttaattatggcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0008g06480.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA14G14000.2 (Glycine max), 5'ss of exon 5
GTGAGGAAGCTTTAAAAAAACTTGAGGAAAGAGGAGTGGTCATACGTTTCGTAATTGGTCGGAGgttgtcccacacacttaaatcttcattttgtatttgtatggcacttcctttcttttttcctcc-ttataaaactagcttagtttatctttgcattacaagcattatgattatggtggattttatagaaagtttta-tcttaacttaattatggcag-------------------
|| || || ||||||||||| ||||||||||||||||||||||| || |||||||||||||| |||| |||||| || | ||| ||||| | | ||| | | ||| | | |||| | ||| || | | | | || | || || | ||| || | | |||||| |||||||
---GTGATGCCTTGAAAAAACTTGAAGAAAGAGGAGTGGTCATACGTTTTGTTATTGGTCGGAGgtttctccactcactta--tccttattagctattt---tagtactcgcatgatttctctttaagctatagtggttatttatcttctttatttcccttg-gtgctaatctaatagtttgtgagataacaatcatgggttcaaacttatttatggccaaataatttctaattgacag
upper sequence: Vv04s0008g06480.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA17G32180.1 (Glycine max), 5'ss of exon 5
GTGAGGAAGCTTTAAAAAAACTTGAGGAAAGAGGAGTGGTCATACGTTTCGTAATTGGTCGGAGgttgtcccacacacttaaatcttcattttgtatttgtatggcacttcctttcttttttcctccttataaaactagcttagtttatctttgcattacaagcattatgattatggtggattttataga---aagttttatcttaacttaat-tatggcag-------
|| || || ||||||||||| ||||||||||||||||||||||| || |||||||||||||| |||| |||||| || | ||| ||| ||| | | | | |||| | | | | | ||| || | | | ||| | | | | || | || ||| || || || | | || |||| | | |
---GTGATGCCTTGAAAAAACTTGAAGAAAGAGGAGTGGTCATACGTTTTGTTATTGGTCGGAGgtttctccactcactta--tccttattagctatgcctattatagtactcacatgatttctttttaagctataatggttatttaacttctttatttcccatggtgctaatccagtagtttatatggattcaaacttatttatgacctaatactttgtaattgacag
upper sequence: Vv04s0008g06480.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT4G32120.1 (Arabidopsis thaliana), 5'ss of exon 5
GTGAGGAAGCTTTAAAAAAACTTGAGGAAAGAGGAGTGGTCATACGTTTCGTAATTGGTCGGAGgttgtcccacacacttaaatcttcattttgtatttgtatggcacttcctttcttttttcctccttataaaactagcttagtttatctttgcattacaagcattatgattatggtggattttatagaaagttttatcttaacttaattatggcag
| || ||| | ||||||||||||||||||||||| |||||||| || || |||||||||||||| ||| || ||||| | ||||||||| | | | | || |||| || || | | |||| | || |
---ATGATGCTCTTAAAAAACTTGAGGAAAGAGGAGTTGTCATACGCTTTGTGATTGGTCGGAGgttttcctactcactttattcttcatttctt-------tagaattttaaagtttttcatggtctaatgttaat-gctttataaatttccag---------------------------------------------------------------
upper sequence: Vv04s0008g06480.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT2G25300.1 (Arabidopsis thaliana), 5'ss of exon 5
GTGAGGAAGCTTTAAAAAAACTTGAGGAAAGAGGAGTGGTCATACGTTTCGTAATTGGTCGGAGgttgtcccacacacttaaatcttcattttgtatttgtatggcacttcctttcttttt-tcctccttataaaacta---gct-tagt--ttatctttgcattacaagcattatgattatggtggattttatagaaagttttatcttaacttaattatggcag
|| ||||| | |||||||||||||||||| | ||||||||||| || |||||||| ||||| |||| | || | || || | ||| |||| ||| |||||| | ||| |||| | ||| || |||| |||| || || |||| |||
---GTGATGCTTTGAGGAAACTTGAGGAAAGAGGAATTGTCATACGTTTTGTGATTGGTCGAAGgtttgtccactaattttatctttgtttgtttatacgtatcaagcttttcatcttttcgtgctcgttatcaccctatggactatagtacttatgttcttgtttcaagaattccag-----------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71856228|gb|DT005283.1|DT005283EST: NNNNNNCTTGAGGAAAGAGGAGTGGTCATACGTTTCGTAATTGGTCGGAG TGCTAATCGAGGTGATAGCTTAGATCGCAATATTGATGTGGAAAATCGCTT
genomic: AAAAAACTTGAGGAAAGAGGAGTGGTCATACGTTTCGTAATTGGTCGGAGgttgtcccac ... attatggcagTGCTAATCGAGGTGATAGCTTAGATCGCAATATTGATGTGGAAAATCGCTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGAGGAAGCTTTAAAAAAACTTGAGGAAAGAGGAGTGGTCATACGTTTCGTAATTGGTCGGAGgttgtcccacacacttaaatcttcattttgtatttgtatggcacttcctttcttttttcctccttataaaactagcttagtttatctttgcattacaagcattatgattatggtggattttatagaaagttttatcttaacttaattatggcag
- - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - GAGGAG